miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 28228 0.68 0.339924
Target:  5'- cGGGCGcGUcacggugaccGUGacGCGCGCGCgGCGCUc -3'
miRNA:   3'- -UCCGU-CA----------UACacCGCGCGUGgCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 33450 0.68 0.339924
Target:  5'- cGGCAGcAU-UGGCagcgGCGCGCCGgGCg -3'
miRNA:   3'- uCCGUCaUAcACCG----CGCGUGGCgCGg -5'
17171 5' -59.6 NC_004333.2 + 2428 0.68 0.324028
Target:  5'- cGGCAGcGUGccuugguacGGCGCGgcgaacacCugCGCGCCg -3'
miRNA:   3'- uCCGUCaUACa--------CCGCGC--------GugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9538 0.68 0.31629
Target:  5'- cGGCGGc----GGUGCgGCAcCCGCGCCu -3'
miRNA:   3'- uCCGUCauacaCCGCG-CGU-GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 36166 0.68 0.31629
Target:  5'- -cGUAcGUGgcUGGCGCGCagcGCCGCGUCa -3'
miRNA:   3'- ucCGU-CAUacACCGCGCG---UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20392 0.68 0.31629
Target:  5'- aAGGCc----GUGGC-CGCagugGCCGCGCCg -3'
miRNA:   3'- -UCCGucauaCACCGcGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46201 0.68 0.315524
Target:  5'- cGGCGugAUccucgaacuugccGUaGCGCGCACCGCGCUc -3'
miRNA:   3'- uCCGUcaUA-------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 906 0.68 0.311715
Target:  5'- aGGGguGUugGUcggcauugcgcccucGUaGCGUGCGCCGCGCUa -3'
miRNA:   3'- -UCCguCA--UA---------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 27365 0.68 0.308692
Target:  5'- uGGuGCGGUAgccGUggaagugcccGGCGCGacgGCCGUGCCg -3'
miRNA:   3'- -UC-CGUCAUa--CA----------CCGCGCg--UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 12287 0.68 0.308692
Target:  5'- cGGCAccg-GcGGCGCGCAUugcggcguccugCGCGCCa -3'
miRNA:   3'- uCCGUcauaCaCCGCGCGUG------------GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 44469 0.69 0.301235
Target:  5'- cGGCAGgccguUGUacCGCGCA-CGCGCCg -3'
miRNA:   3'- uCCGUCau---ACAccGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 37255 0.69 0.301235
Target:  5'- cGGCGcgcGUcGUGagcGGCGUGuCGCCGCGCUg -3'
miRNA:   3'- uCCGU---CA-UACa--CCGCGC-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 43433 0.69 0.293917
Target:  5'- cGGGuCGGgcUGacggacGCGCGCAUCGCGCg -3'
miRNA:   3'- -UCC-GUCauACac----CGCGCGUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 25204 0.69 0.279698
Target:  5'- cGGGCAGgccgcgaacGUGcGCGC-CGCCGUGCUc -3'
miRNA:   3'- -UCCGUCaua------CAC-CGCGcGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 3291 0.69 0.279698
Target:  5'- cGGCGucaUcgGggcgGGCgGCGCGCCGgGCCg -3'
miRNA:   3'- uCCGUc--AuaCa---CCG-CGCGUGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 33490 0.69 0.272797
Target:  5'- cGGCuacg-GUucGGCGCGCagucGCUGCGCCg -3'
miRNA:   3'- uCCGucauaCA--CCGCGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 47804 0.69 0.272797
Target:  5'- cGGGguGUAcgagGccacGGCGCGCGaCGUGCCg -3'
miRNA:   3'- -UCCguCAUa---Ca---CCGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9631 0.7 0.259405
Target:  5'- cGGCuGccgGcGGCGCGC-CUGCGCCc -3'
miRNA:   3'- uCCGuCauaCaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 47981 0.7 0.259405
Target:  5'- cGGCGGUGUGcGGCugugcuacaucgGCGCGuucuggcuugcCCGCGCg -3'
miRNA:   3'- uCCGUCAUACaCCG------------CGCGU-----------GGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 13973 0.7 0.246554
Target:  5'- cGGCGGccgGUGcGCGCGaGCUGCGCg -3'
miRNA:   3'- uCCGUCauaCAC-CGCGCgUGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.