miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17172 3' -54.4 NC_004333.2 + 23158 0.66 0.751742
Target:  5'- gGUGCCaucGCcCGUCAcgUCgGUCGGUGc -3'
miRNA:   3'- gCACGG---CGuGCGGUaaAGgCAGCUAC- -5'
17172 3' -54.4 NC_004333.2 + 40285 0.66 0.751742
Target:  5'- cCGUaCCGCAUGCgcggUuuGUCGAUGu -3'
miRNA:   3'- -GCAcGGCGUGCGguaaAggCAGCUAC- -5'
17172 3' -54.4 NC_004333.2 + 11947 0.66 0.741217
Target:  5'- gGUGCuCGCGC-CCGUUUCgGcCGAc- -3'
miRNA:   3'- gCACG-GCGUGcGGUAAAGgCaGCUac -5'
17172 3' -54.4 NC_004333.2 + 704 0.66 0.741217
Target:  5'- uCGUGCCGC-CGCCcgcgagcgCCGUggCGAg- -3'
miRNA:   3'- -GCACGGCGuGCGGuaaa----GGCA--GCUac -5'
17172 3' -54.4 NC_004333.2 + 43573 0.66 0.73058
Target:  5'- gCGUGUCGCGCGCUcg--CC-UCGAa- -3'
miRNA:   3'- -GCACGGCGUGCGGuaaaGGcAGCUac -5'
17172 3' -54.4 NC_004333.2 + 28883 0.66 0.72951
Target:  5'- uCGUGCCGCgcgaucgcgcucgGCGCaggccggcgCAUacuugCCGUCGGUGc -3'
miRNA:   3'- -GCACGGCG-------------UGCG---------GUAaa---GGCAGCUAC- -5'
17172 3' -54.4 NC_004333.2 + 23373 0.66 0.719842
Target:  5'- cCGUGCCGCcCGUCAg-UCCGgacagggCGGUc -3'
miRNA:   3'- -GCACGGCGuGCGGUaaAGGCa------GCUAc -5'
17172 3' -54.4 NC_004333.2 + 22371 0.66 0.709015
Target:  5'- --cGCCGCACGCg----CCGagGAUGg -3'
miRNA:   3'- gcaCGGCGUGCGguaaaGGCagCUAC- -5'
17172 3' -54.4 NC_004333.2 + 14242 0.67 0.698111
Target:  5'- gCGUGCgCGCGCGCC---UCUuUCGAg- -3'
miRNA:   3'- -GCACG-GCGUGCGGuaaAGGcAGCUac -5'
17172 3' -54.4 NC_004333.2 + 1136 0.68 0.642837
Target:  5'- cCGUGCUGCGCGCgacguugcacugCAUaUCCGaUCGcgGc -3'
miRNA:   3'- -GCACGGCGUGCG------------GUAaAGGC-AGCuaC- -5'
17172 3' -54.4 NC_004333.2 + 13424 0.68 0.642837
Target:  5'- uCGUGCCGCGC-CCGUacaCCGUgcCGAa- -3'
miRNA:   3'- -GCACGGCGUGcGGUAaa-GGCA--GCUac -5'
17172 3' -54.4 NC_004333.2 + 9474 0.68 0.620582
Target:  5'- gGUGCCGCAcCGCCGccgagCUGcUCGAg- -3'
miRNA:   3'- gCACGGCGU-GCGGUaaa--GGC-AGCUac -5'
17172 3' -54.4 NC_004333.2 + 40844 0.68 0.609464
Target:  5'- gCGUGCCuGCG-GCCAggUCUGcgCGAUGc -3'
miRNA:   3'- -GCACGG-CGUgCGGUaaAGGCa-GCUAC- -5'
17172 3' -54.4 NC_004333.2 + 239 0.68 0.609464
Target:  5'- gGUcGCCcCACGCCGUg-CCGUuCGAUGu -3'
miRNA:   3'- gCA-CGGcGUGCGGUAaaGGCA-GCUAC- -5'
17172 3' -54.4 NC_004333.2 + 20760 0.68 0.609464
Target:  5'- aCGcgGCUGCGCGCCugaa-CGUCGAc- -3'
miRNA:   3'- -GCa-CGGCGUGCGGuaaagGCAGCUac -5'
17172 3' -54.4 NC_004333.2 + 40801 0.68 0.598368
Target:  5'- -aUGUCGCuCGCC----CCGUCGAUGg -3'
miRNA:   3'- gcACGGCGuGCGGuaaaGGCAGCUAC- -5'
17172 3' -54.4 NC_004333.2 + 26883 0.69 0.543497
Target:  5'- --cGCUGCAgGCCGgg-CCGUCGGc- -3'
miRNA:   3'- gcaCGGCGUgCGGUaaaGGCAGCUac -5'
17172 3' -54.4 NC_004333.2 + 18303 0.7 0.521989
Target:  5'- gCGUGCCGUcgGCGUCGUagauUUCCGgcgcguauugCGAUGc -3'
miRNA:   3'- -GCACGGCG--UGCGGUA----AAGGCa---------GCUAC- -5'
17172 3' -54.4 NC_004333.2 + 11134 0.7 0.490375
Target:  5'- --gGCCGCACGCCcgg-CgGUCGAg- -3'
miRNA:   3'- gcaCGGCGUGCGGuaaaGgCAGCUac -5'
17172 3' -54.4 NC_004333.2 + 26284 0.71 0.459681
Target:  5'- uGUGgCGCGCaCCGcg-CCGUCGAUGc -3'
miRNA:   3'- gCACgGCGUGcGGUaaaGGCAGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.