miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 6662 0.67 0.611409
Target:  5'- -nUCG-G-CGCGCUCGaGCAGGCGCg- -3'
miRNA:   3'- acAGCgCaGCGCGAGC-CGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 677 0.67 0.611409
Target:  5'- gGUaGUGccCGUGCUCGGUGAGCGCg- -3'
miRNA:   3'- aCAgCGCa-GCGCGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 15463 0.67 0.600316
Target:  5'- gGUCGaucggCGCGCUUGGCGugccgAGCGCa- -3'
miRNA:   3'- aCAGCgca--GCGCGAGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 1110 0.67 0.619186
Target:  5'- cGUCGCaGUCGCGCgcgaagUCGGUgccgugcugcgcgcGAcguuGCACUGc -3'
miRNA:   3'- aCAGCG-CAGCGCG------AGCCG--------------UU----UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 18473 0.67 0.611409
Target:  5'- cGagGCGUUGCGCUucggaCGGCAcgAGCAUg- -3'
miRNA:   3'- aCagCGCAGCGCGA-----GCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 8693 0.67 0.600316
Target:  5'- -cUCGaCGUCGCGCaUCGGCuucguGCAUc- -3'
miRNA:   3'- acAGC-GCAGCGCG-AGCCGuu---UGUGac -5'
17173 3' -55.4 NC_004333.2 + 28822 0.67 0.58925
Target:  5'- gGUCGaCG-CgGCGCUCGcGCAGuuGCUGg -3'
miRNA:   3'- aCAGC-GCaG-CGCGAGC-CGUUugUGAC- -5'
17173 3' -55.4 NC_004333.2 + 39098 0.67 0.58925
Target:  5'- aG-CGCGUuuuUGC-CUCGGCGAACAgCUGc -3'
miRNA:   3'- aCaGCGCA---GCGcGAGCCGUUUGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 25653 0.67 0.578221
Target:  5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3'
miRNA:   3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 28043 0.68 0.534641
Target:  5'- gUGUCGC-UCGUGaUCGGCGuaAGCACg- -3'
miRNA:   3'- -ACAGCGcAGCGCgAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 37897 0.68 0.534641
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCa- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 1565 0.68 0.567238
Target:  5'- cGUCGC-UCGCGCaguUCGaGCAAAU-CUGg -3'
miRNA:   3'- aCAGCGcAGCGCG---AGC-CGUUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 348 0.68 0.523919
Target:  5'- cGUCGcCGUgacCGUGCUCGGCGgcGugACg- -3'
miRNA:   3'- aCAGC-GCA---GCGCGAGCCGU--UugUGac -5'
17173 3' -55.4 NC_004333.2 + 40862 0.68 0.523919
Target:  5'- gGUCGCcggcgaugGUCGCGCgacUCGGUAucUACUGc -3'
miRNA:   3'- aCAGCG--------CAGCGCG---AGCCGUuuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 35953 0.68 0.520718
Target:  5'- cGUgCGCGUCGCaacgggccggcucuGCUUGGaucGCACUGa -3'
miRNA:   3'- aCA-GCGCAGCG--------------CGAGCCguuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 48005 0.68 0.533566
Target:  5'- cGgCGCGUucuggcuugcccgCGCGCUCuGGCGuguugGGCGCUGg -3'
miRNA:   3'- aCaGCGCA-------------GCGCGAG-CCGU-----UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 15559 0.68 0.51328
Target:  5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3'
miRNA:   3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 37205 0.68 0.556308
Target:  5'- -aUCGCGUCGUGCggcGUGAGCGCUu -3'
miRNA:   3'- acAGCGCAGCGCGagcCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 465 0.69 0.502731
Target:  5'- -aUCGCGcgcucuaCGCGCUCGGC-AACuCUGu -3'
miRNA:   3'- acAGCGCa------GCGCGAGCCGuUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 33347 0.69 0.461544
Target:  5'- --aCGCG-CGCGCUCGGCuGAAC-UUGa -3'
miRNA:   3'- acaGCGCaGCGCGAGCCG-UUUGuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.