miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 44927 0.7 0.411748
Target:  5'- cGUCGCG-CGCGCcgaagaagUCGGCAGcuauccuGCGCg- -3'
miRNA:   3'- aCAGCGCaGCGCG--------AGCCGUU-------UGUGac -5'
17173 3' -55.4 NC_004333.2 + 45992 0.7 0.422208
Target:  5'- -cUCGCGcaaCGCggccaGCUCGGCAAGCACc- -3'
miRNA:   3'- acAGCGCa--GCG-----CGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 26389 0.7 0.441628
Target:  5'- gGUCGUGauaGCGCUUGGCugcAGCGCg- -3'
miRNA:   3'- aCAGCGCag-CGCGAGCCGu--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 22615 0.7 0.441628
Target:  5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3'
miRNA:   3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5'
17173 3' -55.4 NC_004333.2 + 33347 0.69 0.461544
Target:  5'- --aCGCG-CGCGCUCGGCuGAAC-UUGa -3'
miRNA:   3'- acaGCGCaGCGCGAGCCG-UUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 21203 0.69 0.461544
Target:  5'- aGUUGCG-CGCGCUCGuucagggcgcucGCGAACAUc- -3'
miRNA:   3'- aCAGCGCaGCGCGAGC------------CGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 13876 0.69 0.471679
Target:  5'- cGcCGCGcCGCGCgaagUCGGCcGGCACg- -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 12408 0.69 0.471679
Target:  5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3'
miRNA:   3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 31380 0.69 0.471679
Target:  5'- ---gGCGcCGUGCUCGGCGucGGCGCa- -3'
miRNA:   3'- acagCGCaGCGCGAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 36254 0.69 0.480895
Target:  5'- -cUUGCGcccaaucUCGUGCUCGuGCAGGCGCUc -3'
miRNA:   3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 44791 0.69 0.481925
Target:  5'- aGUCGaGcUGCGcCUCGGCGAACGCc- -3'
miRNA:   3'- aCAGCgCaGCGC-GAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 38376 0.69 0.481925
Target:  5'- cUGUCGCGUgucgggUGCGC-CGGCGuGACGCc- -3'
miRNA:   3'- -ACAGCGCA------GCGCGaGCCGU-UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 2075 0.69 0.492277
Target:  5'- cGUCGgGcaucaucCGCGC-CGGCGuAACGCUGa -3'
miRNA:   3'- aCAGCgCa------GCGCGaGCCGU-UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 29007 0.69 0.492277
Target:  5'- cGUgCGCaUCGCGCgCGGCuAGCACg- -3'
miRNA:   3'- aCA-GCGcAGCGCGaGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 465 0.69 0.502731
Target:  5'- -aUCGCGcgcucuaCGCGCUCGGC-AACuCUGu -3'
miRNA:   3'- acAGCGCa------GCGCGAGCCGuUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 33052 0.69 0.502731
Target:  5'- cGU-GCGUaGCGgUCGGCcacGAGCGCUGg -3'
miRNA:   3'- aCAgCGCAgCGCgAGCCG---UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 30455 0.69 0.502731
Target:  5'- gGUCGCuUCGaCGUUCGGCAu-CGCg- -3'
miRNA:   3'- aCAGCGcAGC-GCGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 15559 0.68 0.51328
Target:  5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3'
miRNA:   3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 35953 0.68 0.520718
Target:  5'- cGUgCGCGUCGCaacgggccggcucuGCUUGGaucGCACUGa -3'
miRNA:   3'- aCA-GCGCAGCG--------------CGAGCCguuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 348 0.68 0.523919
Target:  5'- cGUCGcCGUgacCGUGCUCGGCGgcGugACg- -3'
miRNA:   3'- aCAGC-GCA---GCGCGAGCCGU--UugUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.