Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 30455 | 0.69 | 0.502731 |
Target: 5'- gGUCGCuUCGaCGUUCGGCAu-CGCg- -3' miRNA: 3'- aCAGCGcAGC-GCGAGCCGUuuGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 2075 | 0.69 | 0.492277 |
Target: 5'- cGUCGgGcaucaucCGCGC-CGGCGuAACGCUGa -3' miRNA: 3'- aCAGCgCa------GCGCGaGCCGU-UUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 29007 | 0.69 | 0.492277 |
Target: 5'- cGUgCGCaUCGCGCgCGGCuAGCACg- -3' miRNA: 3'- aCA-GCGcAGCGCGaGCCGuUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 38376 | 0.69 | 0.481925 |
Target: 5'- cUGUCGCGUgucgggUGCGC-CGGCGuGACGCc- -3' miRNA: 3'- -ACAGCGCA------GCGCGaGCCGU-UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 44791 | 0.69 | 0.481925 |
Target: 5'- aGUCGaGcUGCGcCUCGGCGAACGCc- -3' miRNA: 3'- aCAGCgCaGCGC-GAGCCGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 36254 | 0.69 | 0.480895 |
Target: 5'- -cUUGCGcccaaucUCGUGCUCGuGCAGGCGCUc -3' miRNA: 3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 13876 | 0.69 | 0.471679 |
Target: 5'- cGcCGCGcCGCGCgaagUCGGCcGGCACg- -3' miRNA: 3'- aCaGCGCaGCGCG----AGCCGuUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 31380 | 0.69 | 0.471679 |
Target: 5'- ---gGCGcCGUGCUCGGCGucGGCGCa- -3' miRNA: 3'- acagCGCaGCGCGAGCCGU--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 12408 | 0.69 | 0.471679 |
Target: 5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3' miRNA: 3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 21203 | 0.69 | 0.461544 |
Target: 5'- aGUUGCG-CGCGCUCGuucagggcgcucGCGAACAUc- -3' miRNA: 3'- aCAGCGCaGCGCGAGC------------CGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 33347 | 0.69 | 0.461544 |
Target: 5'- --aCGCG-CGCGCUCGGCuGAAC-UUGa -3' miRNA: 3'- acaGCGCaGCGCGAGCCG-UUUGuGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 26389 | 0.7 | 0.441628 |
Target: 5'- gGUCGUGauaGCGCUUGGCugcAGCGCg- -3' miRNA: 3'- aCAGCGCag-CGCGAGCCGu--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 22615 | 0.7 | 0.441628 |
Target: 5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3' miRNA: 3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 45992 | 0.7 | 0.422208 |
Target: 5'- -cUCGCGcaaCGCggccaGCUCGGCAAGCACc- -3' miRNA: 3'- acAGCGCa--GCG-----CGAGCCGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 44927 | 0.7 | 0.411748 |
Target: 5'- cGUCGCG-CGCGCcgaagaagUCGGCAGcuauccuGCGCg- -3' miRNA: 3'- aCAGCGCaGCGCG--------AGCCGUU-------UGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 37277 | 0.71 | 0.384956 |
Target: 5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3' miRNA: 3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 41350 | 0.71 | 0.370677 |
Target: 5'- gUGUaCGUGUgGCGCUCGagcacgcgcccgaccGCAAGCACUu -3' miRNA: 3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 27314 | 0.71 | 0.367164 |
Target: 5'- cGagGCGUCgGCGCa-GGCAGACGCUc -3' miRNA: 3'- aCagCGCAG-CGCGagCCGUUUGUGAc -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 9194 | 0.71 | 0.367164 |
Target: 5'- cGU-GCGUuaCGUGCUCGGCGgcGACAUUGc -3' miRNA: 3'- aCAgCGCA--GCGCGAGCCGU--UUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 43659 | 0.71 | 0.367164 |
Target: 5'- uUGcUCGCGcacUCGCGUUCgaGGCGAGCGCg- -3' miRNA: 3'- -AC-AGCGC---AGCGCGAG--CCGUUUGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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