miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 15559 0.68 0.51328
Target:  5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3'
miRNA:   3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 17207 0.66 0.655867
Target:  5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5'
17173 3' -55.4 NC_004333.2 + 18473 0.67 0.611409
Target:  5'- cGagGCGUUGCGCUucggaCGGCAcgAGCAUg- -3'
miRNA:   3'- aCagCGCAGCGCGA-----GCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 18922 0.66 0.633641
Target:  5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5'
17173 3' -55.4 NC_004333.2 + 19487 0.66 0.666952
Target:  5'- cGUCGCGgguaGCGCggcguaGGCGuAGCGCa- -3'
miRNA:   3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 20577 0.71 0.358483
Target:  5'- cGUCGgGUCGCGCcgugguguuUCuGCAGGCGCg- -3'
miRNA:   3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 21203 0.69 0.461544
Target:  5'- aGUUGCG-CGCGCUCGuucagggcgcucGCGAACAUc- -3'
miRNA:   3'- aCAGCGCaGCGCGAGC------------CGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 22615 0.7 0.441628
Target:  5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3'
miRNA:   3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5'
17173 3' -55.4 NC_004333.2 + 23105 0.73 0.301801
Target:  5'- gGUUGCGUCG-GCUgaaCGGC-GGCACUGa -3'
miRNA:   3'- aCAGCGCAGCgCGA---GCCGuUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 24768 0.73 0.272639
Target:  5'- cUGUCGCG-CGCGCggaUCGGCAuGCAgUUGa -3'
miRNA:   3'- -ACAGCGCaGCGCG---AGCCGUuUGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 24797 0.66 0.666952
Target:  5'- gGUUGCGggCaCGUUCGGCAGcuGCGCg- -3'
miRNA:   3'- aCAGCGCa-GcGCGAGCCGUU--UGUGac -5'
17173 3' -55.4 NC_004333.2 + 25653 0.67 0.578221
Target:  5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3'
miRNA:   3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 25737 0.66 0.687912
Target:  5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3'
miRNA:   3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 25952 0.66 0.666952
Target:  5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3'
miRNA:   3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 26389 0.7 0.441628
Target:  5'- gGUCGUGauaGCGCUUGGCugcAGCGCg- -3'
miRNA:   3'- aCAGCGCag-CGCGAGCCGu--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 26849 1.07 0.00105
Target:  5'- cUGUCGCGUCGCGCUCGGCAAACACUGc -3'
miRNA:   3'- -ACAGCGCAGCGCGAGCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 27314 0.71 0.367164
Target:  5'- cGagGCGUCgGCGCa-GGCAGACGCUc -3'
miRNA:   3'- aCagCGCAG-CGCGagCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 27484 0.66 0.666952
Target:  5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3'
miRNA:   3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28043 0.68 0.534641
Target:  5'- gUGUCGC-UCGUGaUCGGCGuaAGCACg- -3'
miRNA:   3'- -ACAGCGcAGCGCgAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28422 0.72 0.309458
Target:  5'- --aCGUGUCGCGC-CGGUGucGCGCUGa -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUu-UGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.