miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 28822 0.67 0.58925
Target:  5'- gGUCGaCG-CgGCGCUCGcGCAGuuGCUGg -3'
miRNA:   3'- aCAGC-GCaG-CGCGAGC-CGUUugUGAC- -5'
17173 3' -55.4 NC_004333.2 + 28889 0.75 0.22711
Target:  5'- cG-CGCGaUCGCGCUCGGCGcaggccGGCGCa- -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGU------UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 29007 0.69 0.492277
Target:  5'- cGUgCGCaUCGCGCgCGGCuAGCACg- -3'
miRNA:   3'- aCA-GCGcAGCGCGaGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 30037 0.77 0.159617
Target:  5'- gUGgcagCGCGgcCGCGCUCGGCAcGCGCUu -3'
miRNA:   3'- -ACa---GCGCa-GCGCGAGCCGUuUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 30455 0.69 0.502731
Target:  5'- gGUCGCuUCGaCGUUCGGCAu-CGCg- -3'
miRNA:   3'- aCAGCGcAGC-GCGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 30626 0.66 0.655867
Target:  5'- gGUCGUGcagcaGCGCggcaaggcgCGGCGuGCGCUGc -3'
miRNA:   3'- aCAGCGCag---CGCGa--------GCCGUuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 31380 0.69 0.471679
Target:  5'- ---gGCGcCGUGCUCGGCGucGGCGCa- -3'
miRNA:   3'- acagCGCaGCGCGAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 32539 0.75 0.221157
Target:  5'- cGUCGCGcggCGCGCUCGcGuCGAuCACUGc -3'
miRNA:   3'- aCAGCGCa--GCGCGAGC-C-GUUuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 32601 0.75 0.198666
Target:  5'- aG-CGCGcCGCGCgacgUCGGCAAACGCUu -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 32954 0.66 0.655867
Target:  5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGg -3'
miRNA:   3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5'
17173 3' -55.4 NC_004333.2 + 33052 0.69 0.502731
Target:  5'- cGU-GCGUaGCGgUCGGCcacGAGCGCUGg -3'
miRNA:   3'- aCAgCGCAgCGCgAGCCG---UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 33347 0.69 0.461544
Target:  5'- --aCGCG-CGCGCUCGGCuGAAC-UUGa -3'
miRNA:   3'- acaGCGCaGCGCGAGCCG-UUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 35017 0.66 0.678004
Target:  5'- uUGcCG-GUCGCGCcgaacaccaUCGGCGugacGCGCUGu -3'
miRNA:   3'- -ACaGCgCAGCGCG---------AGCCGUu---UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 35699 0.66 0.689011
Target:  5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3'
miRNA:   3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 35953 0.68 0.520718
Target:  5'- cGUgCGCGUCGCaacgggccggcucuGCUUGGaucGCACUGa -3'
miRNA:   3'- aCA-GCGCAGCG--------------CGAGCCguuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 36254 0.69 0.480895
Target:  5'- -cUUGCGcccaaucUCGUGCUCGuGCAGGCGCUc -3'
miRNA:   3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 36329 0.71 0.358483
Target:  5'- gUGUCGCugcauGUCGUgGCUCGGCGAGguCUa -3'
miRNA:   3'- -ACAGCG-----CAGCG-CGAGCCGUUUguGAc -5'
17173 3' -55.4 NC_004333.2 + 37205 0.68 0.556308
Target:  5'- -aUCGCGUCGUGCggcGUGAGCGCUu -3'
miRNA:   3'- acAGCGCAGCGCGagcCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 37277 0.71 0.384956
Target:  5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 37897 0.68 0.534641
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCa- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.