miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 38376 0.69 0.481925
Target:  5'- cUGUCGCGUgucgggUGCGC-CGGCGuGACGCc- -3'
miRNA:   3'- -ACAGCGCA------GCGCGaGCCGU-UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 38548 0.66 0.633641
Target:  5'- cGUC-CGaCGCGCUCacGGCAacGACACa- -3'
miRNA:   3'- aCAGcGCaGCGCGAG--CCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 39098 0.67 0.58925
Target:  5'- aG-CGCGUuuuUGC-CUCGGCGAACAgCUGc -3'
miRNA:   3'- aCaGCGCA---GCGcGAGCCGUUUGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 40862 0.68 0.523919
Target:  5'- gGUCGCcggcgaugGUCGCGCgacUCGGUAucUACUGc -3'
miRNA:   3'- aCAGCG--------CAGCGCG---AGCCGUuuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 41350 0.71 0.370677
Target:  5'- gUGUaCGUGUgGCGCUCGagcacgcgcccgaccGCAAGCACUu -3'
miRNA:   3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 42131 0.72 0.32441
Target:  5'- cGUCGUgaaucucguacgaGUCGCuuUCGGCGAGCACg- -3'
miRNA:   3'- aCAGCG-------------CAGCGcgAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 43659 0.71 0.367164
Target:  5'- uUGcUCGCGcacUCGCGUUCgaGGCGAGCGCg- -3'
miRNA:   3'- -AC-AGCGC---AGCGCGAG--CCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 44791 0.69 0.481925
Target:  5'- aGUCGaGcUGCGcCUCGGCGAACGCc- -3'
miRNA:   3'- aCAGCgCaGCGC-GAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 44812 0.66 0.64476
Target:  5'- cGcCGCGa--CGCUCGGCGaggacauggacGACGCUGg -3'
miRNA:   3'- aCaGCGCagcGCGAGCCGU-----------UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 44927 0.7 0.411748
Target:  5'- cGUCGCG-CGCGCcgaagaagUCGGCAGcuauccuGCGCg- -3'
miRNA:   3'- aCAGCGCaGCGCG--------AGCCGUU-------UGUGac -5'
17173 3' -55.4 NC_004333.2 + 45030 0.73 0.272639
Target:  5'- cG-CGCGUgGCGCUggcggCGcGCAAACGCUGa -3'
miRNA:   3'- aCaGCGCAgCGCGA-----GC-CGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 45745 0.66 0.678004
Target:  5'- -aUCGCG-CGCccGCUCGGUAggUGCa- -3'
miRNA:   3'- acAGCGCaGCG--CGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 45992 0.7 0.422208
Target:  5'- -cUCGCGcaaCGCggccaGCUCGGCAAGCACc- -3'
miRNA:   3'- acAGCGCa--GCG-----CGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 46877 0.66 0.666952
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 48005 0.68 0.533566
Target:  5'- cGgCGCGUucuggcuugcccgCGCGCUCuGGCGuguugGGCGCUGg -3'
miRNA:   3'- aCaGCGCA-------------GCGCGAG-CCGU-----UUGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.