Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 26389 | 0.7 | 0.441628 |
Target: 5'- gGUCGUGauaGCGCUUGGCugcAGCGCg- -3' miRNA: 3'- aCAGCGCag-CGCGAGCCGu--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 25952 | 0.66 | 0.666952 |
Target: 5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3' miRNA: 3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 25737 | 0.66 | 0.687912 |
Target: 5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3' miRNA: 3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 25653 | 0.67 | 0.578221 |
Target: 5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3' miRNA: 3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 24797 | 0.66 | 0.666952 |
Target: 5'- gGUUGCGggCaCGUUCGGCAGcuGCGCg- -3' miRNA: 3'- aCAGCGCa-GcGCGAGCCGUU--UGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 24768 | 0.73 | 0.272639 |
Target: 5'- cUGUCGCG-CGCGCggaUCGGCAuGCAgUUGa -3' miRNA: 3'- -ACAGCGCaGCGCG---AGCCGUuUGU-GAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 23105 | 0.73 | 0.301801 |
Target: 5'- gGUUGCGUCG-GCUgaaCGGC-GGCACUGa -3' miRNA: 3'- aCAGCGCAGCgCGA---GCCGuUUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 22615 | 0.7 | 0.441628 |
Target: 5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3' miRNA: 3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 21203 | 0.69 | 0.461544 |
Target: 5'- aGUUGCG-CGCGCUCGuucagggcgcucGCGAACAUc- -3' miRNA: 3'- aCAGCGCaGCGCGAGC------------CGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 20577 | 0.71 | 0.358483 |
Target: 5'- cGUCGgGUCGCGCcgugguguuUCuGCAGGCGCg- -3' miRNA: 3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 19487 | 0.66 | 0.666952 |
Target: 5'- cGUCGCGgguaGCGCggcguaGGCGuAGCGCa- -3' miRNA: 3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 18922 | 0.66 | 0.633641 |
Target: 5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3' miRNA: 3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 18473 | 0.67 | 0.611409 |
Target: 5'- cGagGCGUUGCGCUucggaCGGCAcgAGCAUg- -3' miRNA: 3'- aCagCGCAGCGCGA-----GCCGU--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 17207 | 0.66 | 0.655867 |
Target: 5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3' miRNA: 3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 15559 | 0.68 | 0.51328 |
Target: 5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3' miRNA: 3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 15463 | 0.67 | 0.600316 |
Target: 5'- gGUCGaucggCGCGCUUGGCGugccgAGCGCa- -3' miRNA: 3'- aCAGCgca--GCGCGAGCCGU-----UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 14414 | 0.66 | 0.630305 |
Target: 5'- cGcCGUGUCGCGCgUCuacaucgaagaggcGGCGAACGgUGc -3' miRNA: 3'- aCaGCGCAGCGCG-AG--------------CCGUUUGUgAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 13876 | 0.69 | 0.471679 |
Target: 5'- cGcCGCGcCGCGCgaagUCGGCcGGCACg- -3' miRNA: 3'- aCaGCGCaGCGCG----AGCCGuUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 12408 | 0.69 | 0.471679 |
Target: 5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3' miRNA: 3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 11905 | 0.67 | 0.600316 |
Target: 5'- cGUCGCGgcccggcaUGCGCagCGGCGcGCGCg- -3' miRNA: 3'- aCAGCGCa-------GCGCGa-GCCGUuUGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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