miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 27314 0.71 0.367164
Target:  5'- cGagGCGUCgGCGCa-GGCAGACGCUc -3'
miRNA:   3'- aCagCGCAG-CGCGagCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 17207 0.66 0.655867
Target:  5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5'
17173 3' -55.4 NC_004333.2 + 46877 0.66 0.666952
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 25952 0.66 0.666952
Target:  5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3'
miRNA:   3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 37277 0.71 0.384956
Target:  5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 27484 0.66 0.666952
Target:  5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3'
miRNA:   3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 45992 0.7 0.422208
Target:  5'- -cUCGCGcaaCGCggccaGCUCGGCAAGCACc- -3'
miRNA:   3'- acAGCGCa--GCG-----CGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28822 0.67 0.58925
Target:  5'- gGUCGaCG-CgGCGCUCGcGCAGuuGCUGg -3'
miRNA:   3'- aCAGC-GCaG-CGCGAGC-CGUUugUGAC- -5'
17173 3' -55.4 NC_004333.2 + 39098 0.67 0.58925
Target:  5'- aG-CGCGUuuuUGC-CUCGGCGAACAgCUGc -3'
miRNA:   3'- aCaGCGCA---GCGcGAGCCGUUUGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 30455 0.69 0.502731
Target:  5'- gGUCGCuUCGaCGUUCGGCAu-CGCg- -3'
miRNA:   3'- aCAGCGcAGC-GCGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 3072 0.75 0.209652
Target:  5'- cGUCGCGgcggaCGCGC-CGGCGAGCGuCUa -3'
miRNA:   3'- aCAGCGCa----GCGCGaGCCGUUUGU-GAc -5'
17173 3' -55.4 NC_004333.2 + 32601 0.75 0.198666
Target:  5'- aG-CGCGcCGCGCgacgUCGGCAAACGCUu -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 30037 0.77 0.159617
Target:  5'- gUGgcagCGCGgcCGCGCUCGGCAcGCGCUu -3'
miRNA:   3'- -ACa---GCGCa-GCGCGAGCCGUuUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 465 0.69 0.502731
Target:  5'- -aUCGCGcgcucuaCGCGCUCGGC-AACuCUGu -3'
miRNA:   3'- acAGCGCa------GCGCGAGCCGuUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 15559 0.68 0.51328
Target:  5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3'
miRNA:   3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 44791 0.69 0.481925
Target:  5'- aGUCGaGcUGCGcCUCGGCGAACGCc- -3'
miRNA:   3'- aCAGCgCaGCGC-GAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 36254 0.69 0.480895
Target:  5'- -cUUGCGcccaaucUCGUGCUCGuGCAGGCGCUc -3'
miRNA:   3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 31380 0.69 0.471679
Target:  5'- ---gGCGcCGUGCUCGGCGucGGCGCa- -3'
miRNA:   3'- acagCGCaGCGCGAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 1565 0.68 0.567238
Target:  5'- cGUCGC-UCGCGCaguUCGaGCAAAU-CUGg -3'
miRNA:   3'- aCAGCGcAGCGCG---AGC-CGUUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 25653 0.67 0.578221
Target:  5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3'
miRNA:   3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.