miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 42131 0.72 0.32441
Target:  5'- cGUCGUgaaucucguacgaGUCGCuuUCGGCGAGCACg- -3'
miRNA:   3'- aCAGCG-------------CAGCGcgAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 36329 0.71 0.358483
Target:  5'- gUGUCGCugcauGUCGUgGCUCGGCGAGguCUa -3'
miRNA:   3'- -ACAGCG-----CAGCG-CGAGCCGUUUguGAc -5'
17173 3' -55.4 NC_004333.2 + 43659 0.71 0.367164
Target:  5'- uUGcUCGCGcacUCGCGUUCgaGGCGAGCGCg- -3'
miRNA:   3'- -AC-AGCGC---AGCGCGAG--CCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 9194 0.71 0.367164
Target:  5'- cGU-GCGUuaCGUGCUCGGCGgcGACAUUGc -3'
miRNA:   3'- aCAgCGCA--GCGCGAGCCGU--UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 27314 0.71 0.367164
Target:  5'- cGagGCGUCgGCGCa-GGCAGACGCUc -3'
miRNA:   3'- aCagCGCAG-CGCGagCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 37277 0.71 0.384956
Target:  5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 22615 0.7 0.441628
Target:  5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3'
miRNA:   3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5'
17173 3' -55.4 NC_004333.2 + 33347 0.69 0.461544
Target:  5'- --aCGCG-CGCGCUCGGCuGAAC-UUGa -3'
miRNA:   3'- acaGCGCaGCGCGAGCCG-UUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 21203 0.69 0.461544
Target:  5'- aGUUGCG-CGCGCUCGuucagggcgcucGCGAACAUc- -3'
miRNA:   3'- aCAGCGCaGCGCGAGC------------CGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 31380 0.69 0.471679
Target:  5'- ---gGCGcCGUGCUCGGCGucGGCGCa- -3'
miRNA:   3'- acagCGCaGCGCGAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 36254 0.69 0.480895
Target:  5'- -cUUGCGcccaaucUCGUGCUCGuGCAGGCGCUc -3'
miRNA:   3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 44791 0.69 0.481925
Target:  5'- aGUCGaGcUGCGcCUCGGCGAACGCc- -3'
miRNA:   3'- aCAGCgCaGCGC-GAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 2075 0.69 0.492277
Target:  5'- cGUCGgGcaucaucCGCGC-CGGCGuAACGCUGa -3'
miRNA:   3'- aCAGCgCa------GCGCGaGCCGU-UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 30455 0.69 0.502731
Target:  5'- gGUCGCuUCGaCGUUCGGCAu-CGCg- -3'
miRNA:   3'- aCAGCGcAGC-GCGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 25737 0.66 0.687912
Target:  5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3'
miRNA:   3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.