Results 21 - 40 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 465 | 0.69 | 0.502731 |
Target: 5'- -aUCGCGcgcucuaCGCGCUCGGC-AACuCUGu -3' miRNA: 3'- acAGCGCa------GCGCGAGCCGuUUGuGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 18922 | 0.66 | 0.633641 |
Target: 5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3' miRNA: 3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 17207 | 0.66 | 0.655867 |
Target: 5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3' miRNA: 3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 46877 | 0.66 | 0.666952 |
Target: 5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3' miRNA: 3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 25952 | 0.66 | 0.666952 |
Target: 5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3' miRNA: 3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 19487 | 0.66 | 0.666952 |
Target: 5'- cGUCGCGgguaGCGCggcguaGGCGuAGCGCa- -3' miRNA: 3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 27484 | 0.66 | 0.666952 |
Target: 5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3' miRNA: 3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 45745 | 0.66 | 0.678004 |
Target: 5'- -aUCGCG-CGCccGCUCGGUAggUGCa- -3' miRNA: 3'- acAGCGCaGCG--CGAGCCGUuuGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 25737 | 0.66 | 0.687912 |
Target: 5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3' miRNA: 3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 14414 | 0.66 | 0.630305 |
Target: 5'- cGcCGUGUCGCGCgUCuacaucgaagaggcGGCGAACGgUGc -3' miRNA: 3'- aCaGCGCAGCGCG-AG--------------CCGUUUGUgAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 18473 | 0.67 | 0.611409 |
Target: 5'- cGagGCGUUGCGCUucggaCGGCAcgAGCAUg- -3' miRNA: 3'- aCagCGCAGCGCGA-----GCCGU--UUGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 8693 | 0.67 | 0.600316 |
Target: 5'- -cUCGaCGUCGCGCaUCGGCuucguGCAUc- -3' miRNA: 3'- acAGC-GCAGCGCG-AGCCGuu---UGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 15559 | 0.68 | 0.51328 |
Target: 5'- cGcCGCGagcagcccugUUGCGCUCGGCAcgccaAGCGCg- -3' miRNA: 3'- aCaGCGC----------AGCGCGAGCCGU-----UUGUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 35953 | 0.68 | 0.520718 |
Target: 5'- cGUgCGCGUCGCaacgggccggcucuGCUUGGaucGCACUGa -3' miRNA: 3'- aCA-GCGCAGCG--------------CGAGCCguuUGUGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 348 | 0.68 | 0.523919 |
Target: 5'- cGUCGcCGUgacCGUGCUCGGCGgcGugACg- -3' miRNA: 3'- aCAGC-GCA---GCGCGAGCCGU--UugUGac -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 37205 | 0.68 | 0.556308 |
Target: 5'- -aUCGCGUCGUGCggcGUGAGCGCUu -3' miRNA: 3'- acAGCGCAGCGCGagcCGUUUGUGAc -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 1565 | 0.68 | 0.567238 |
Target: 5'- cGUCGC-UCGCGCaguUCGaGCAAAU-CUGg -3' miRNA: 3'- aCAGCGcAGCGCG---AGC-CGUUUGuGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 25653 | 0.67 | 0.578221 |
Target: 5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3' miRNA: 3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 39098 | 0.67 | 0.58925 |
Target: 5'- aG-CGCGUuuuUGC-CUCGGCGAACAgCUGc -3' miRNA: 3'- aCaGCGCA---GCGcGAGCCGUUUGU-GAC- -5' |
|||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 28822 | 0.67 | 0.58925 |
Target: 5'- gGUCGaCG-CgGCGCUCGcGCAGuuGCUGg -3' miRNA: 3'- aCAGC-GCaG-CGCGAGC-CGUUugUGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home