miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 26849 1.07 0.00105
Target:  5'- cUGUCGCGUCGCGCUCGGCAAACACUGc -3'
miRNA:   3'- -ACAGCGCAGCGCGAGCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 48005 0.68 0.533566
Target:  5'- cGgCGCGUucuggcuugcccgCGCGCUCuGGCGuguugGGCGCUGg -3'
miRNA:   3'- aCaGCGCA-------------GCGCGAG-CCGU-----UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 37897 0.68 0.534641
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCa- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 35699 0.66 0.689011
Target:  5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3'
miRNA:   3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 45030 0.73 0.272639
Target:  5'- cG-CGCGUgGCGCUggcggCGcGCAAACGCUGa -3'
miRNA:   3'- aCaGCGCAgCGCGA-----GC-CGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 23105 0.73 0.301801
Target:  5'- gGUUGCGUCG-GCUgaaCGGC-GGCACUGa -3'
miRNA:   3'- aCAGCGCAGCgCGA---GCCGuUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 20577 0.71 0.358483
Target:  5'- cGUCGgGUCGCGCcgugguguuUCuGCAGGCGCg- -3'
miRNA:   3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 41350 0.71 0.370677
Target:  5'- gUGUaCGUGUgGCGCUCGagcacgcgcccgaccGCAAGCACUu -3'
miRNA:   3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 12408 0.69 0.471679
Target:  5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3'
miRNA:   3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 40862 0.68 0.523919
Target:  5'- gGUCGCcggcgaugGUCGCGCgacUCGGUAucUACUGc -3'
miRNA:   3'- aCAGCG--------CAGCGCG---AGCCGUuuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 38376 0.69 0.481925
Target:  5'- cUGUCGCGUgucgggUGCGC-CGGCGuGACGCc- -3'
miRNA:   3'- -ACAGCGCA------GCGCGaGCCGU-UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 26389 0.7 0.441628
Target:  5'- gGUCGUGauaGCGCUUGGCugcAGCGCg- -3'
miRNA:   3'- aCAGCGCag-CGCGAGCCGu--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 32539 0.75 0.221157
Target:  5'- cGUCGCGcggCGCGCUCGcGuCGAuCACUGc -3'
miRNA:   3'- aCAGCGCa--GCGCGAGC-C-GUUuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 29007 0.69 0.492277
Target:  5'- cGUgCGCaUCGCGCgCGGCuAGCACg- -3'
miRNA:   3'- aCA-GCGcAGCGCGaGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 6624 0.75 0.226508
Target:  5'- aGUCGCaGguaaucaacucgaUCGCGCUCGGCAGcGCGCUc -3'
miRNA:   3'- aCAGCG-C-------------AGCGCGAGCCGUU-UGUGAc -5'
17173 3' -55.4 NC_004333.2 + 44927 0.7 0.411748
Target:  5'- cGUCGCG-CGCGCcgaagaagUCGGCAGcuauccuGCGCg- -3'
miRNA:   3'- aCAGCGCaGCGCG--------AGCCGUU-------UGUGac -5'
17173 3' -55.4 NC_004333.2 + 33052 0.69 0.502731
Target:  5'- cGU-GCGUaGCGgUCGGCcacGAGCGCUGg -3'
miRNA:   3'- aCAgCGCAgCGCgAGCCG---UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 28043 0.68 0.534641
Target:  5'- gUGUCGC-UCGUGaUCGGCGuaAGCACg- -3'
miRNA:   3'- -ACAGCGcAGCGCgAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28889 0.75 0.22711
Target:  5'- cG-CGCGaUCGCGCUCGGCGcaggccGGCGCa- -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGU------UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28422 0.72 0.309458
Target:  5'- --aCGUGUCGCGC-CGGUGucGCGCUGa -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUu-UGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.