miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17174 5' -59.8 NC_004333.2 + 29107 0.69 0.278309
Target:  5'- gGGCGGC--GCgGUGC-UCGCGCuGGUu -3'
miRNA:   3'- -CCGCCGucUGgCACGaAGCGCG-CCAu -5'
17174 5' -59.8 NC_004333.2 + 20944 0.69 0.278309
Target:  5'- cGGCGGCuacgccacGGGCCGgacGCaaacgCGCGCGGc- -3'
miRNA:   3'- -CCGCCG--------UCUGGCa--CGaa---GCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 6662 0.69 0.271454
Target:  5'- gGGCGGCGcGCCGUgGCggCGaUGCGGg- -3'
miRNA:   3'- -CCGCCGUcUGGCA-CGaaGC-GCGCCau -5'
17174 5' -59.8 NC_004333.2 + 4655 0.69 0.264735
Target:  5'- uGGCgacgGGCAGGCCGg----CGCGCGGg- -3'
miRNA:   3'- -CCG----CCGUCUGGCacgaaGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 22051 0.7 0.245388
Target:  5'- gGGCGGaCAGAUCGUGCacgGCGCGu-- -3'
miRNA:   3'- -CCGCC-GUCUGGCACGaagCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 41634 0.7 0.239204
Target:  5'- uGGCGGCAGAUUGU-Cgg-GCGCGGg- -3'
miRNA:   3'- -CCGCCGUCUGGCAcGaagCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 1848 0.7 0.233151
Target:  5'- aGUGuGCAGGCCG-GUgUCGUGCGGUu -3'
miRNA:   3'- cCGC-CGUCUGGCaCGaAGCGCGCCAu -5'
17174 5' -59.8 NC_004333.2 + 3929 0.71 0.221432
Target:  5'- cGGCGGCAGGCCGaccgGCaggUUgGCGCcguucugcaGGUAg -3'
miRNA:   3'- -CCGCCGUCUGGCa---CG---AAgCGCG---------CCAU- -5'
17174 5' -59.8 NC_004333.2 + 9538 0.71 0.194318
Target:  5'- cGGCGGCGGugCG-GCaccCGCGCcuGGUGc -3'
miRNA:   3'- -CCGCCGUCugGCaCGaa-GCGCG--CCAU- -5'
17174 5' -59.8 NC_004333.2 + 20574 0.74 0.133363
Target:  5'- cGGCGGCGG-CCGgcaGCggUUGCGCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa-AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 13627 0.77 0.076403
Target:  5'- cGGCGaGCAcuUCGUGCaUCGCGCGGUAc -3'
miRNA:   3'- -CCGC-CGUcuGGCACGaAGCGCGCCAU- -5'
17174 5' -59.8 NC_004333.2 + 27198 1.08 0.000365
Target:  5'- uGGCGGCAGACCGUGCUUCGCGCGGUAc -3'
miRNA:   3'- -CCGCCGUCUGGCACGAAGCGCGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.