miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17175 3' -54.9 NC_004333.2 + 38767 0.66 0.707036
Target:  5'- -cGGCGGCuGCGGgaauuucagcGCGGCGgccaGCuGCUCGa -3'
miRNA:   3'- guUCGCCG-UGCU----------UGCCGUa---CG-UGAGC- -5'
17175 3' -54.9 NC_004333.2 + 11115 0.66 0.704847
Target:  5'- -cAGCGGCACGAAaucgccucgccgGGCA-GCACg-- -3'
miRNA:   3'- guUCGCCGUGCUUg-----------CCGUaCGUGagc -5'
17175 3' -54.9 NC_004333.2 + 46851 0.66 0.696064
Target:  5'- aCAAGCuGCucauCG-ACGcCGUGCGCUCGa -3'
miRNA:   3'- -GUUCGcCGu---GCuUGCcGUACGUGAGC- -5'
17175 3' -54.9 NC_004333.2 + 18610 0.66 0.696064
Target:  5'- -cGGCaGGCGCGGGCGGCAacccuuuccUGUAaagCGu -3'
miRNA:   3'- guUCG-CCGUGCUUGCCGU---------ACGUga-GC- -5'
17175 3' -54.9 NC_004333.2 + 12124 0.66 0.696064
Target:  5'- cCGAGCGGCACGAGCucGCcgucGUGgUCGu -3'
miRNA:   3'- -GUUCGCCGUGCUUGc-CGua--CGUgAGC- -5'
17175 3' -54.9 NC_004333.2 + 39237 0.66 0.696064
Target:  5'- --cGCaGCACGGGCGGCAggaUGUcgUCGa -3'
miRNA:   3'- guuCGcCGUGCUUGCCGU---ACGugAGC- -5'
17175 3' -54.9 NC_004333.2 + 9003 0.66 0.696064
Target:  5'- aCAGcGcCGGCGCGAACGaagccGCGUcGCGCaUCGa -3'
miRNA:   3'- -GUU-C-GCCGUGCUUGC-----CGUA-CGUG-AGC- -5'
17175 3' -54.9 NC_004333.2 + 4328 0.66 0.696064
Target:  5'- cCGGGC-GCACGAACGuGCGcgGCAucCUCa -3'
miRNA:   3'- -GUUCGcCGUGCUUGC-CGUa-CGU--GAGc -5'
17175 3' -54.9 NC_004333.2 + 1655 0.66 0.696064
Target:  5'- gCGAGUacagcaugGGCAUcGACGGCAcGUugUCGg -3'
miRNA:   3'- -GUUCG--------CCGUGcUUGCCGUaCGugAGC- -5'
17175 3' -54.9 NC_004333.2 + 30368 0.66 0.685029
Target:  5'- --cGCaGGCGCG-ACGGCG-GCcaGCUCGc -3'
miRNA:   3'- guuCG-CCGUGCuUGCCGUaCG--UGAGC- -5'
17175 3' -54.9 NC_004333.2 + 38365 0.66 0.685029
Target:  5'- --cGCGuGCACGGuCGcGCGUGCAucgauCUCGu -3'
miRNA:   3'- guuCGC-CGUGCUuGC-CGUACGU-----GAGC- -5'
17175 3' -54.9 NC_004333.2 + 2997 0.66 0.683922
Target:  5'- -cAGCGGCACGuuGACGGuCAcgaccgcUGCGCa-- -3'
miRNA:   3'- guUCGCCGUGC--UUGCC-GU-------ACGUGagc -5'
17175 3' -54.9 NC_004333.2 + 39935 0.66 0.673941
Target:  5'- uGGGCGaaGCGAuCGaGCAaGCGCUCGa -3'
miRNA:   3'- gUUCGCcgUGCUuGC-CGUaCGUGAGC- -5'
17175 3' -54.9 NC_004333.2 + 39222 0.66 0.673941
Target:  5'- --cGuCGGC-CGAGCuGCGUGCaauGCUCGa -3'
miRNA:   3'- guuC-GCCGuGCUUGcCGUACG---UGAGC- -5'
17175 3' -54.9 NC_004333.2 + 12448 0.66 0.673941
Target:  5'- cCGGGCggGGCGCGGGCGG---GCGCUaCGg -3'
miRNA:   3'- -GUUCG--CCGUGCUUGCCguaCGUGA-GC- -5'
17175 3' -54.9 NC_004333.2 + 2369 0.66 0.67283
Target:  5'- gCGGGCGuGCcggccacgguacACGAcuugcgACGGCAaacgcgcUGCGCUCGa -3'
miRNA:   3'- -GUUCGC-CG------------UGCU------UGCCGU-------ACGUGAGC- -5'
17175 3' -54.9 NC_004333.2 + 22863 0.66 0.662813
Target:  5'- --uGCGGCccgGCGAuCGGCGcgaucguacugGCGCUCGu -3'
miRNA:   3'- guuCGCCG---UGCUuGCCGUa----------CGUGAGC- -5'
17175 3' -54.9 NC_004333.2 + 15950 0.66 0.662813
Target:  5'- -uGGCGGuCACG-GCGGCu--CGCUCGc -3'
miRNA:   3'- guUCGCC-GUGCuUGCCGuacGUGAGC- -5'
17175 3' -54.9 NC_004333.2 + 20445 0.66 0.662813
Target:  5'- -cGGCGGCGCGAA--GCcUGCGC-CGg -3'
miRNA:   3'- guUCGCCGUGCUUgcCGuACGUGaGC- -5'
17175 3' -54.9 NC_004333.2 + 6823 0.66 0.662813
Target:  5'- gAGGC-GCGCGAccGgGGCGccgugGCGCUCGa -3'
miRNA:   3'- gUUCGcCGUGCU--UgCCGUa----CGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.