miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17176 5' -48.4 NC_004333.2 + 7397 0.66 0.973501
Target:  5'- aGCCGcAGGUCgccguguccuugccuUCGACGCGCgGCGc--- -3'
miRNA:   3'- -CGGCuUUUAG---------------AGUUGCGCG-CGCaaag -5'
17176 5' -48.4 NC_004333.2 + 30916 0.66 0.972264
Target:  5'- cGCC-AGGcgCUCGACGCGUucuacgacGCGgugUCg -3'
miRNA:   3'- -CGGcUUUuaGAGUUGCGCG--------CGCaa-AG- -5'
17176 5' -48.4 NC_004333.2 + 47198 0.66 0.972264
Target:  5'- aGCaCGAggcacAAGUCgccgCGACGgGCGCGcuacUUUCg -3'
miRNA:   3'- -CG-GCU-----UUUAGa---GUUGCgCGCGC----AAAG- -5'
17176 5' -48.4 NC_004333.2 + 30216 0.66 0.972264
Target:  5'- aGCCGcugccuGAUCgaUCGACGCGcCGCGc--- -3'
miRNA:   3'- -CGGCuu----UUAG--AGUUGCGC-GCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 30027 0.66 0.972264
Target:  5'- gGCCGcg---CUCGGCaCGCGCuUUUCg -3'
miRNA:   3'- -CGGCuuuuaGAGUUGcGCGCGcAAAG- -5'
17176 5' -48.4 NC_004333.2 + 35027 0.66 0.968989
Target:  5'- cGCCGAAcaccaUCGGCGUGaCGCGcugUCc -3'
miRNA:   3'- -CGGCUUuuag-AGUUGCGC-GCGCaa-AG- -5'
17176 5' -48.4 NC_004333.2 + 22440 0.66 0.968989
Target:  5'- gGCCauc---CUCGGCGCGUGCGgcgCa -3'
miRNA:   3'- -CGGcuuuuaGAGUUGCGCGCGCaaaG- -5'
17176 5' -48.4 NC_004333.2 + 25518 0.66 0.968989
Target:  5'- gGCCGAGcgcGUCUUgguACGCGCcgcucgaggucaGCGggUCg -3'
miRNA:   3'- -CGGCUUu--UAGAGu--UGCGCG------------CGCaaAG- -5'
17176 5' -48.4 NC_004333.2 + 11031 0.66 0.965447
Target:  5'- cCCGu-AAUCUCGccaaGCGCGCcCGggUCg -3'
miRNA:   3'- cGGCuuUUAGAGU----UGCGCGcGCaaAG- -5'
17176 5' -48.4 NC_004333.2 + 28996 0.66 0.965447
Target:  5'- cGCCGG--GUCggcgugcgCAuCGCGCGCGg--- -3'
miRNA:   3'- -CGGCUuuUAGa-------GUuGCGCGCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 25184 0.66 0.965447
Target:  5'- cGCCGc--GUCUCGAacuCGCuGCGCGacUCg -3'
miRNA:   3'- -CGGCuuuUAGAGUU---GCG-CGCGCaaAG- -5'
17176 5' -48.4 NC_004333.2 + 9238 0.66 0.965447
Target:  5'- cGCCGAAcggGGgcgcCUCGcCGCGUGCGg--- -3'
miRNA:   3'- -CGGCUU---UUa---GAGUuGCGCGCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 1097 0.66 0.965447
Target:  5'- uGCCGcAAGuucacGUCgCAGuCGCGCGCGaagUCg -3'
miRNA:   3'- -CGGC-UUU-----UAGaGUU-GCGCGCGCaa-AG- -5'
17176 5' -48.4 NC_004333.2 + 13015 0.66 0.961631
Target:  5'- cGCCGGGca--UCAACGCcuGCGCGa--- -3'
miRNA:   3'- -CGGCUUuuagAGUUGCG--CGCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 13945 0.66 0.957531
Target:  5'- gGCCGAcu-UCgcgCGGCGCGgCGCGc-UCa -3'
miRNA:   3'- -CGGCUuuuAGa--GUUGCGC-GCGCaaAG- -5'
17176 5' -48.4 NC_004333.2 + 41430 0.66 0.957531
Target:  5'- aUCGAAcaggcgcugCUCGACGCGgGCGagUCg -3'
miRNA:   3'- cGGCUUuua------GAGUUGCGCgCGCaaAG- -5'
17176 5' -48.4 NC_004333.2 + 45016 0.66 0.957531
Target:  5'- uCCGGccg-CUCGAC-CGCGCGUggCg -3'
miRNA:   3'- cGGCUuuuaGAGUUGcGCGCGCAaaG- -5'
17176 5' -48.4 NC_004333.2 + 15346 0.66 0.957531
Target:  5'- uGUCGA---UCUCGgcgcagACGCGCGCGc--- -3'
miRNA:   3'- -CGGCUuuuAGAGU------UGCGCGCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 32188 0.66 0.957531
Target:  5'- cGCCGAGGuUCagGACGacgaGCGCGa--- -3'
miRNA:   3'- -CGGCUUUuAGagUUGCg---CGCGCaaag -5'
17176 5' -48.4 NC_004333.2 + 8945 0.66 0.957531
Target:  5'- cGCCGGcgcuGUC-CAucGCGUGCGCGg--- -3'
miRNA:   3'- -CGGCUuu--UAGaGU--UGCGCGCGCaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.