miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17177 3' -53.8 NC_004333.2 + 3651 0.66 0.760694
Target:  5'- uCGCCGcgAuGUGGCGcacUAUGuGGuCGGCCg -3'
miRNA:   3'- -GCGGCuaU-CACCGUc--AUAU-CC-GUCGG- -5'
17177 3' -53.8 NC_004333.2 + 25812 0.66 0.750131
Target:  5'- aCGCCGAUAGguaaaauuuaUGGgAGgGUcaggggcgcgucAGGCGGUCg -3'
miRNA:   3'- -GCGGCUAUC----------ACCgUCaUA------------UCCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 22175 0.66 0.750131
Target:  5'- uCGCCGGcGGcggccggcGGCGGUuc-GGCGGCUg -3'
miRNA:   3'- -GCGGCUaUCa-------CCGUCAuauCCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 30043 0.66 0.739443
Target:  5'- gCGCCG---GUGGCAGc----GCGGCCg -3'
miRNA:   3'- -GCGGCuauCACCGUCauaucCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 26264 0.66 0.739443
Target:  5'- uCGCUGAacGUgaGGCAGUAUGuGGCGcgcaccgcGCCg -3'
miRNA:   3'- -GCGGCUauCA--CCGUCAUAU-CCGU--------CGG- -5'
17177 3' -53.8 NC_004333.2 + 21416 0.66 0.739443
Target:  5'- gCGCCGGaaugGGCAaauUGGGCGGCg -3'
miRNA:   3'- -GCGGCUaucaCCGUcauAUCCGUCGg -5'
17177 3' -53.8 NC_004333.2 + 44935 0.66 0.732975
Target:  5'- gCGCCGAagaAGUcGGCAGcUauccugcgcgcgcacGUcGGCGGCCg -3'
miRNA:   3'- -GCGGCUa--UCA-CCGUC-A---------------UAuCCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 9561 0.67 0.684544
Target:  5'- gCGCCGAUcGUGGCgAGUucguuGCcGCCa -3'
miRNA:   3'- -GCGGCUAuCACCG-UCAuauc-CGuCGG- -5'
17177 3' -53.8 NC_004333.2 + 46054 0.67 0.684544
Target:  5'- gCGCCGA--GUGGCAGgccGGGaCAccacGCCu -3'
miRNA:   3'- -GCGGCUauCACCGUCauaUCC-GU----CGG- -5'
17177 3' -53.8 NC_004333.2 + 20657 0.67 0.684544
Target:  5'- gCGCUGcgccAGUGGCAGg--AGGCGcacgggaugacGCCg -3'
miRNA:   3'- -GCGGCua--UCACCGUCauaUCCGU-----------CGG- -5'
17177 3' -53.8 NC_004333.2 + 3263 0.67 0.673357
Target:  5'- gGUCGAUcGGaaUGGUAGUgGUAGGCAuacGCCc -3'
miRNA:   3'- gCGGCUA-UC--ACCGUCA-UAUCCGU---CGG- -5'
17177 3' -53.8 NC_004333.2 + 15220 0.67 0.66213
Target:  5'- gGCCGGUcAGacGGCcGUAcagaUAGGguGCCa -3'
miRNA:   3'- gCGGCUA-UCa-CCGuCAU----AUCCguCGG- -5'
17177 3' -53.8 NC_004333.2 + 27338 0.68 0.650874
Target:  5'- aGUCGAguggguaacgAGUGGguGUcaugGUGcGGUAGCCg -3'
miRNA:   3'- gCGGCUa---------UCACCguCA----UAU-CCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 23094 0.68 0.61704
Target:  5'- aCGCUGAc---GGCAGUGcAGGCGGgCg -3'
miRNA:   3'- -GCGGCUaucaCCGUCAUaUCCGUCgG- -5'
17177 3' -53.8 NC_004333.2 + 1804 0.68 0.605776
Target:  5'- aGCCGAUAGUcaGGCuuuGUAUAGaaccGCCg -3'
miRNA:   3'- gCGGCUAUCA--CCGu--CAUAUCcgu-CGG- -5'
17177 3' -53.8 NC_004333.2 + 24285 0.69 0.539014
Target:  5'- gCGCCGuuuuacGGCGGcc-AGGCGGCCg -3'
miRNA:   3'- -GCGGCuauca-CCGUCauaUCCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 15997 0.7 0.528105
Target:  5'- -cCCGAUuGUGGCGGcgauggcaccGUGGGCGGUCg -3'
miRNA:   3'- gcGGCUAuCACCGUCa---------UAUCCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 35975 0.7 0.500147
Target:  5'- uCGCCGAU-GUGGC-GUAUAacGGCgugcgcgucgcaacgGGCCg -3'
miRNA:   3'- -GCGGCUAuCACCGuCAUAU--CCG---------------UCGG- -5'
17177 3' -53.8 NC_004333.2 + 30380 0.7 0.485365
Target:  5'- gGCgGGUGGUGucGCAGgcgcgacGGCGGCCa -3'
miRNA:   3'- gCGgCUAUCAC--CGUCauau---CCGUCGG- -5'
17177 3' -53.8 NC_004333.2 + 33439 0.72 0.414891
Target:  5'- aGCCGcgAGUccGGCAGcAUuGGCAGCg -3'
miRNA:   3'- gCGGCuaUCA--CCGUCaUAuCCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.