miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17177 5' -51.5 NC_004333.2 + 37223 0.66 0.896732
Target:  5'- uGCGGGAu------GCCGCaCGUGAUCGc -3'
miRNA:   3'- -CGCCCUugguuauUGGCG-GCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 6602 0.66 0.896732
Target:  5'- aCGGcGcGCCGcccAgCGCCGCAGUCGc -3'
miRNA:   3'- cGCC-CuUGGUuauUgGCGGCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 13910 0.66 0.88937
Target:  5'- cGCGGcGGCU----GCCGUgGCGAUCGu -3'
miRNA:   3'- -CGCCcUUGGuuauUGGCGgCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 19939 0.66 0.88937
Target:  5'- cGCGccGGGCgGcgAGCCGCCGCGAg-- -3'
miRNA:   3'- -CGCc-CUUGgUuaUUGGCGGCGUUagc -5'
17177 5' -51.5 NC_004333.2 + 15879 0.66 0.88937
Target:  5'- cGCGaGcGAGCCGccGUGACCGCC---AUCGu -3'
miRNA:   3'- -CGC-C-CUUGGU--UAUUGGCGGcguUAGC- -5'
17177 5' -51.5 NC_004333.2 + 2470 0.66 0.88173
Target:  5'- aCGGcGACCAGgcGACCGCCgGCGccGUCa -3'
miRNA:   3'- cGCCcUUGGUUa-UUGGCGG-CGU--UAGc -5'
17177 5' -51.5 NC_004333.2 + 7926 0.66 0.88173
Target:  5'- aGCGcGAGCUggaAAUGGCCGgCGCAggccgcGUCGa -3'
miRNA:   3'- -CGCcCUUGG---UUAUUGGCgGCGU------UAGC- -5'
17177 5' -51.5 NC_004333.2 + 5748 0.66 0.88173
Target:  5'- --aGGAGCCcugcacAUgGCCGCAGUCGa -3'
miRNA:   3'- cgcCCUUGGuuau--UGgCGGCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 40802 0.66 0.880951
Target:  5'- cGCGuucaGGAgcgacuugccgccGCCGGUGACgauCGCgGCGAUCGg -3'
miRNA:   3'- -CGC----CCU-------------UGGUUAUUG---GCGgCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 40686 0.66 0.873818
Target:  5'- cGCGaccgcaaaGAacACCAAcccGAUCGCCGCGAUCGu -3'
miRNA:   3'- -CGCc-------CU--UGGUUa--UUGGCGGCGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 15925 0.66 0.873818
Target:  5'- aCGGu-GCCAuc-GCCGCCaCAAUCGg -3'
miRNA:   3'- cGCCcuUGGUuauUGGCGGcGUUAGC- -5'
17177 5' -51.5 NC_004333.2 + 7921 0.66 0.873818
Target:  5'- uGCGGGuAGuuGAUAuuCgCGCCGCuGUCGc -3'
miRNA:   3'- -CGCCC-UUggUUAUu-G-GCGGCGuUAGC- -5'
17177 5' -51.5 NC_004333.2 + 48075 0.66 0.873818
Target:  5'- cGCGGGcaAGCCAgaacgcgccgauGUAGCacaGCCGCAc--- -3'
miRNA:   3'- -CGCCC--UUGGU------------UAUUGg--CGGCGUuagc -5'
17177 5' -51.5 NC_004333.2 + 44411 0.66 0.873818
Target:  5'- uCGGGcagaucgugauAGCCGuguuGCCGCCGCAGa-- -3'
miRNA:   3'- cGCCC-----------UUGGUuau-UGGCGGCGUUagc -5'
17177 5' -51.5 NC_004333.2 + 12624 0.66 0.873818
Target:  5'- uGCaGGAACaGGUGAuCCGCCcCGAUCa -3'
miRNA:   3'- -CGcCCUUGgUUAUU-GGCGGcGUUAGc -5'
17177 5' -51.5 NC_004333.2 + 12434 0.66 0.865641
Target:  5'- gGCGGGcGCUAcgGcgcccccgACCGUCGCGAaCGu -3'
miRNA:   3'- -CGCCCuUGGUuaU--------UGGCGGCGUUaGC- -5'
17177 5' -51.5 NC_004333.2 + 45392 0.66 0.857207
Target:  5'- cGCGGcGAGCUuGUAACCGUCGaugcccuucUCGa -3'
miRNA:   3'- -CGCC-CUUGGuUAUUGGCGGCguu------AGC- -5'
17177 5' -51.5 NC_004333.2 + 17449 0.67 0.852026
Target:  5'- cCGGGcACCgGAUGuggcgcaacgcgaagGCCGCCGCGcUCa -3'
miRNA:   3'- cGCCCuUGG-UUAU---------------UGGCGGCGUuAGc -5'
17177 5' -51.5 NC_004333.2 + 23535 0.67 0.848523
Target:  5'- uCGGGuAGCCGccgaucugcGUAGCUGUCGCGAaCGc -3'
miRNA:   3'- cGCCC-UUGGU---------UAUUGGCGGCGUUaGC- -5'
17177 5' -51.5 NC_004333.2 + 691 0.67 0.830442
Target:  5'- uCGGuGAGCgCGAUcguGCCGCCGCccgCGa -3'
miRNA:   3'- cGCC-CUUG-GUUAu--UGGCGGCGuuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.