Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17178 | 3' | -54.9 | NC_004333.2 | + | 18300 | 0.66 | 0.761775 |
Target: 5'- uGCCG--UCG-GcGUCGUAGAuUUCCGGc -3' miRNA: 3'- -CGGCcuAGCgC-CAGCGUCUuAAGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 40755 | 0.66 | 0.761775 |
Target: 5'- gGuuGGuguucuUUGCGGUCGC-GAGUgcgCCGa -3' miRNA: 3'- -CggCCu-----AGCGCCAGCGuCUUAa--GGCc -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 26054 | 0.66 | 0.751546 |
Target: 5'- cGCCGGAUUugccaGUGGcgcCGCAGcggcggcgcUUCCGGa -3' miRNA: 3'- -CGGCCUAG-----CGCCa--GCGUCuu-------AAGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 22972 | 0.66 | 0.734935 |
Target: 5'- cGCCGGcagcGUCGCGGUaccggucgccgagaGCAGGAag-CGGa -3' miRNA: 3'- -CGGCC----UAGCGCCAg-------------CGUCUUaagGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 30464 | 0.66 | 0.720185 |
Target: 5'- uCCGGcgC-CGGUCGCuucGAcgUUCGGc -3' miRNA: 3'- cGGCCuaGcGCCAGCGu--CUuaAGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 20310 | 0.67 | 0.709543 |
Target: 5'- cGCCGcGA-CGUGGUUGCcAGGcuugCCGGc -3' miRNA: 3'- -CGGC-CUaGCGCCAGCG-UCUuaa-GGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 24377 | 0.67 | 0.705265 |
Target: 5'- gGUCGG-UCGCGGcuguuccaggucgCGCAGucg-CCGGg -3' miRNA: 3'- -CGGCCuAGCGCCa------------GCGUCuuaaGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 14180 | 0.67 | 0.688046 |
Target: 5'- uGCCGGGUCGC--UCGuCGGGAUg-CGGc -3' miRNA: 3'- -CGGCCUAGCGccAGC-GUCUUAagGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 28695 | 0.67 | 0.688046 |
Target: 5'- uGCCaGAUCGCGagcaGCAcGAcUUCCGGc -3' miRNA: 3'- -CGGcCUAGCGCcag-CGU-CUuAAGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 11052 | 0.67 | 0.676127 |
Target: 5'- cCCGGGUCGaauucucgaccgcCGGgcgUGCGGcccAUUCCGGg -3' miRNA: 3'- cGGCCUAGC-------------GCCa--GCGUCu--UAAGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 20412 | 0.67 | 0.666337 |
Target: 5'- aGCCGG-UCGCGGUaccCGuCGGcacggCCGGc -3' miRNA: 3'- -CGGCCuAGCGCCA---GC-GUCuuaa-GGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 3388 | 0.67 | 0.666337 |
Target: 5'- aCCGGcGUCGCcgucGUCGCGGGAgcUUCGGu -3' miRNA: 3'- cGGCC-UAGCGc---CAGCGUCUUa-AGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 28775 | 0.67 | 0.655429 |
Target: 5'- cGCgCGGGUCGCGGcggCGC-GAcUUCCc- -3' miRNA: 3'- -CG-GCCUAGCGCCa--GCGuCUuAAGGcc -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 25489 | 0.68 | 0.644501 |
Target: 5'- aGCCGGGUUGCGuGUCaugaaGUAGAugcggCCGa -3' miRNA: 3'- -CGGCCUAGCGC-CAG-----CGUCUuaa--GGCc -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 20567 | 0.68 | 0.633561 |
Target: 5'- gGCCGGca-GCGGUugCGCGGcagccgCCGGg -3' miRNA: 3'- -CGGCCuagCGCCA--GCGUCuuaa--GGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 8971 | 0.68 | 0.633561 |
Target: 5'- gGCUGGAUCGUGGgccgugCGCGGcggcgaCCGa -3' miRNA: 3'- -CGGCCUAGCGCCa-----GCGUCuuaa--GGCc -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 803 | 0.68 | 0.62262 |
Target: 5'- uGCCGG-UCGcCGG-CGCAGGA--CCGa -3' miRNA: 3'- -CGGCCuAGC-GCCaGCGUCUUaaGGCc -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 11991 | 0.68 | 0.62262 |
Target: 5'- gGCCGuAUCGCGGU-GCAacGGAUgcggcagcucaUCCGGa -3' miRNA: 3'- -CGGCcUAGCGCCAgCGU--CUUA-----------AGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 8098 | 0.69 | 0.589882 |
Target: 5'- -aCGGGUCGacguaGGUCGuCAGGuagUUCGGg -3' miRNA: 3'- cgGCCUAGCg----CCAGC-GUCUua-AGGCC- -5' |
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17178 | 3' | -54.9 | NC_004333.2 | + | 45273 | 0.69 | 0.589882 |
Target: 5'- gGCCGGGcuUCGUGG-CGCGGAcagcugCCGc -3' miRNA: 3'- -CGGCCU--AGCGCCaGCGUCUuaa---GGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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