miRNA display CGI


Results 21 - 25 of 25 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 3' -54.9 NC_004333.2 + 10219 0.69 0.536126
Target:  5'- cCCGuAUCGCGGUCGC-GAAguggUCGGc -3'
miRNA:   3'- cGGCcUAGCGCCAGCGuCUUaa--GGCC- -5'
17178 3' -54.9 NC_004333.2 + 2884 0.7 0.504688
Target:  5'- cGCCGGAuuUCGUGGUCGCGuacGAug-CCc- -3'
miRNA:   3'- -CGGCCU--AGCGCCAGCGU---CUuaaGGcc -5'
17178 3' -54.9 NC_004333.2 + 10087 0.73 0.329181
Target:  5'- gGUCGGAUCGCGGuacaggUCGUAGAcgcgaUUCGGa -3'
miRNA:   3'- -CGGCCUAGCGCC------AGCGUCUua---AGGCC- -5'
17178 3' -54.9 NC_004333.2 + 2749 0.74 0.321286
Target:  5'- aGCCGaGAUCGCGGcCGCcGug--CCGGu -3'
miRNA:   3'- -CGGC-CUAGCGCCaGCGuCuuaaGGCC- -5'
17178 3' -54.9 NC_004333.2 + 28658 1.12 0.000687
Target:  5'- cGCCGGAUCGCGGUCGCAGAAUUCCGGu -3'
miRNA:   3'- -CGGCCUAGCGCCAGCGUCUUAAGGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.