Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17178 | 5' | -55.2 | NC_004333.2 | + | 11263 | 0.66 | 0.674298 |
Target: 5'- cGCgCGGGUCGCGAGaaguggauUuucaacacgcaggucGGCAuCGACUUCg -3' miRNA: 3'- aCG-GUCUAGCGCUC--------G---------------UCGU-GCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 31393 | 0.67 | 0.580065 |
Target: 5'- gGCCGGcAUUGCGGGCGccguGCuCGGCgUCg -3' miRNA: 3'- aCGGUC-UAGCGCUCGU----CGuGCUGaAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 11129 | 0.67 | 0.613653 |
Target: 5'- cGCC---UCGcCGGGCAGCACGAa--- -3' miRNA: 3'- aCGGucuAGC-GCUCGUCGUGCUgaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 38078 | 0.67 | 0.613653 |
Target: 5'- gGCCgAGAUCGUGAuGCuGaACGGCUUa -3' miRNA: 3'- aCGG-UCUAGCGCU-CGuCgUGCUGAAg -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 14264 | 0.67 | 0.602427 |
Target: 5'- aGCCGa---GCG-GCGGCACGcCUUCg -3' miRNA: 3'- aCGGUcuagCGCuCGUCGUGCuGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 11322 | 0.67 | 0.613653 |
Target: 5'- uUGCaCuGGUCGCGcgcgaugaaGGCGGCGCGG-UUCg -3' miRNA: 3'- -ACG-GuCUAGCGC---------UCGUCGUGCUgAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 11462 | 0.67 | 0.602427 |
Target: 5'- cUGCgAGAUCgaGCGAauCAGCGCGACg-- -3' miRNA: 3'- -ACGgUCUAG--CGCUc-GUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 26685 | 0.67 | 0.613653 |
Target: 5'- cGUCAGGUCGCcAGguGUAUGGaugUCg -3' miRNA: 3'- aCGGUCUAGCGcUCguCGUGCUga-AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 28142 | 0.67 | 0.55678 |
Target: 5'- -aCCAGAUCGCGcgcaucuGGCAGgACGuGCUUa -3' miRNA: 3'- acGGUCUAGCGC-------UCGUCgUGC-UGAAg -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 30305 | 0.67 | 0.613653 |
Target: 5'- cGCaCuGAUCGCGcGCGGCGCG-Cg-- -3' miRNA: 3'- aCG-GuCUAGCGCuCGUCGUGCuGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 2381 | 0.67 | 0.613653 |
Target: 5'- cGCCAGuucaaCGCGGGCGuGCcggccacgguacACGACUUg -3' miRNA: 3'- aCGGUCua---GCGCUCGU-CG------------UGCUGAAg -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 4558 | 0.67 | 0.613653 |
Target: 5'- gGCCAGAUCGgGcaGGCgaugaAGgACGACaUCa -3' miRNA: 3'- aCGGUCUAGCgC--UCG-----UCgUGCUGaAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 11724 | 0.67 | 0.591228 |
Target: 5'- cGCCug--CGCGAcuacugGCAGCGCuACUUCg -3' miRNA: 3'- aCGGucuaGCGCU------CGUCGUGcUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 39861 | 0.67 | 0.591228 |
Target: 5'- gGCCAcagCGCGAGCGGCGuCGG--UCg -3' miRNA: 3'- aCGGUcuaGCGCUCGUCGU-GCUgaAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 21718 | 0.67 | 0.591228 |
Target: 5'- gGCC-GAUcugCGCGcGCAGCAUGcCUUCc -3' miRNA: 3'- aCGGuCUA---GCGCuCGUCGUGCuGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 47256 | 0.67 | 0.580065 |
Target: 5'- gUGCCucugcugCGCG-GCAGCGCGuuCUUCc -3' miRNA: 3'- -ACGGucua---GCGCuCGUCGUGCu-GAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 9151 | 0.67 | 0.565622 |
Target: 5'- aGCCAGAUuuacCGCGAGgcgcucacgcagauCGGCGuCGACgugUCg -3' miRNA: 3'- aCGGUCUA----GCGCUC--------------GUCGU-GCUGa--AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 21241 | 0.67 | 0.557883 |
Target: 5'- gGCCGGccUGCG-GCAGCGCGAag-Cg -3' miRNA: 3'- aCGGUCuaGCGCuCGUCGUGCUgaaG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 24814 | 0.67 | 0.557883 |
Target: 5'- cGCCGcguUCGUGAGCGGCuucuCGACc-- -3' miRNA: 3'- aCGGUcu-AGCGCUCGUCGu---GCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 12450 | 0.67 | 0.557883 |
Target: 5'- cGCCGGGcggggCGCGGGCGGgcgcUACGGCg-- -3' miRNA: 3'- aCGGUCUa----GCGCUCGUC----GUGCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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