Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17178 | 5' | -55.2 | NC_004333.2 | + | 28694 | 1.09 | 0.000789 |
Target: 5'- cUGCCAGAUCGCGAGCAGCACGACUUCc -3' miRNA: 3'- -ACGGUCUAGCGCUCGUCGUGCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 28775 | 0.88 | 0.025438 |
Target: 5'- cGCgCGGGUCGCG-GCGGCGCGACUUCc -3' miRNA: 3'- aCG-GUCUAGCGCuCGUCGUGCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 30621 | 0.87 | 0.0287 |
Target: 5'- cGCCAGGUCGUGcAGCAGCGCGGCa-- -3' miRNA: 3'- aCGGUCUAGCGC-UCGUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 13977 | 0.79 | 0.1058 |
Target: 5'- gGCCGGugcgCGCGAGCuGCGCGcGCUUCu -3' miRNA: 3'- aCGGUCua--GCGCUCGuCGUGC-UGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 32344 | 0.78 | 0.121819 |
Target: 5'- cUGCCGGGUCGCugcccgauagcguGcGCAGCACGACgUUCa -3' miRNA: 3'- -ACGGUCUAGCG-------------CuCGUCGUGCUG-AAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 8971 | 0.77 | 0.153305 |
Target: 5'- gGCUGGAUCGUGGGCcguGCGCGGCggCg -3' miRNA: 3'- aCGGUCUAGCGCUCGu--CGUGCUGaaG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 19495 | 0.76 | 0.166735 |
Target: 5'- cGCguGAacgUCGCGGGUAGCGCGGCg-- -3' miRNA: 3'- aCGguCU---AGCGCUCGUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 48146 | 0.75 | 0.202236 |
Target: 5'- cGCCucGUCGgcacCGAGCAGCACGACaUCg -3' miRNA: 3'- aCGGucUAGC----GCUCGUCGUGCUGaAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 32952 | 0.75 | 0.213523 |
Target: 5'- gGCguGcgCGuCGGGCAGCuuuGCGACUUCg -3' miRNA: 3'- aCGguCuaGC-GCUCGUCG---UGCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 14179 | 0.75 | 0.201136 |
Target: 5'- aUGCCGGGUCGCucgucgggaugcGGCAGCAUGACg-- -3' miRNA: 3'- -ACGGUCUAGCGc-----------UCGUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 39057 | 0.74 | 0.219368 |
Target: 5'- aGCCGGAcgGCGAGUAcGCGCGACUc- -3' miRNA: 3'- aCGGUCUagCGCUCGU-CGUGCUGAag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 36047 | 0.74 | 0.231466 |
Target: 5'- -aCCAGGUCGCGAGCAcgguGCucgACGGCUUg -3' miRNA: 3'- acGGUCUAGCGCUCGU----CG---UGCUGAAg -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 20592 | 0.74 | 0.244121 |
Target: 5'- gGCCGcca-GCGAGCGGCGCGGCggCg -3' miRNA: 3'- aCGGUcuagCGCUCGUCGUGCUGaaG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 41621 | 0.74 | 0.250662 |
Target: 5'- aGCCGG-UCGUGAGCAuCGCGACg-- -3' miRNA: 3'- aCGGUCuAGCGCUCGUcGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 29127 | 0.73 | 0.264176 |
Target: 5'- cGCCAacucggcgcGAUCGUGGGCGGCGCGGu--- -3' miRNA: 3'- aCGGU---------CUAGCGCUCGUCGUGCUgaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 13658 | 0.73 | 0.285547 |
Target: 5'- gGgCAGcugCGCGAGCAGCACGAg--- -3' miRNA: 3'- aCgGUCua-GCGCUCGUCGUGCUgaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 28996 | 0.72 | 0.332325 |
Target: 5'- cGCCGGGUCgGCGuGCGcaucgcGCGCGGCUa- -3' miRNA: 3'- aCGGUCUAG-CGCuCGU------CGUGCUGAag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 8602 | 0.72 | 0.300538 |
Target: 5'- aUGCCGG-UCGCGcuguucGGCAcGgGCGACUUCu -3' miRNA: 3'- -ACGGUCuAGCGC------UCGU-CgUGCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 39253 | 0.71 | 0.38449 |
Target: 5'- cUGCCGGugcagCGCGcGCAGCACgGGCggCa -3' miRNA: 3'- -ACGGUCua---GCGCuCGUCGUG-CUGaaG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 1206 | 0.71 | 0.375428 |
Target: 5'- gUGCaacGUCGCGcGCAGCACGGCa-- -3' miRNA: 3'- -ACGgucUAGCGCuCGUCGUGCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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