miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 28694 1.09 0.000789
Target:  5'- cUGCCAGAUCGCGAGCAGCACGACUUCc -3'
miRNA:   3'- -ACGGUCUAGCGCUCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 28775 0.88 0.025438
Target:  5'- cGCgCGGGUCGCG-GCGGCGCGACUUCc -3'
miRNA:   3'- aCG-GUCUAGCGCuCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 30621 0.87 0.0287
Target:  5'- cGCCAGGUCGUGcAGCAGCGCGGCa-- -3'
miRNA:   3'- aCGGUCUAGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 13977 0.79 0.1058
Target:  5'- gGCCGGugcgCGCGAGCuGCGCGcGCUUCu -3'
miRNA:   3'- aCGGUCua--GCGCUCGuCGUGC-UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 32344 0.78 0.121819
Target:  5'- cUGCCGGGUCGCugcccgauagcguGcGCAGCACGACgUUCa -3'
miRNA:   3'- -ACGGUCUAGCG-------------CuCGUCGUGCUG-AAG- -5'
17178 5' -55.2 NC_004333.2 + 8971 0.77 0.153305
Target:  5'- gGCUGGAUCGUGGGCcguGCGCGGCggCg -3'
miRNA:   3'- aCGGUCUAGCGCUCGu--CGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 19495 0.76 0.166735
Target:  5'- cGCguGAacgUCGCGGGUAGCGCGGCg-- -3'
miRNA:   3'- aCGguCU---AGCGCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 14179 0.75 0.201136
Target:  5'- aUGCCGGGUCGCucgucgggaugcGGCAGCAUGACg-- -3'
miRNA:   3'- -ACGGUCUAGCGc-----------UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 48146 0.75 0.202236
Target:  5'- cGCCucGUCGgcacCGAGCAGCACGACaUCg -3'
miRNA:   3'- aCGGucUAGC----GCUCGUCGUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 32952 0.75 0.213523
Target:  5'- gGCguGcgCGuCGGGCAGCuuuGCGACUUCg -3'
miRNA:   3'- aCGguCuaGC-GCUCGUCG---UGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39057 0.74 0.219368
Target:  5'- aGCCGGAcgGCGAGUAcGCGCGACUc- -3'
miRNA:   3'- aCGGUCUagCGCUCGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 36047 0.74 0.231466
Target:  5'- -aCCAGGUCGCGAGCAcgguGCucgACGGCUUg -3'
miRNA:   3'- acGGUCUAGCGCUCGU----CG---UGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 20592 0.74 0.244121
Target:  5'- gGCCGcca-GCGAGCGGCGCGGCggCg -3'
miRNA:   3'- aCGGUcuagCGCUCGUCGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 41621 0.74 0.250662
Target:  5'- aGCCGG-UCGUGAGCAuCGCGACg-- -3'
miRNA:   3'- aCGGUCuAGCGCUCGUcGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 29127 0.73 0.264176
Target:  5'- cGCCAacucggcgcGAUCGUGGGCGGCGCGGu--- -3'
miRNA:   3'- aCGGU---------CUAGCGCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 13658 0.73 0.285547
Target:  5'- gGgCAGcugCGCGAGCAGCACGAg--- -3'
miRNA:   3'- aCgGUCua-GCGCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 8602 0.72 0.300538
Target:  5'- aUGCCGG-UCGCGcuguucGGCAcGgGCGACUUCu -3'
miRNA:   3'- -ACGGUCuAGCGC------UCGU-CgUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 28996 0.72 0.332325
Target:  5'- cGCCGGGUCgGCGuGCGcaucgcGCGCGGCUa- -3'
miRNA:   3'- aCGGUCUAG-CGCuCGU------CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 31227 0.71 0.340647
Target:  5'- aUGCCGG-UCGCGAcgGCcGCGCGGCg-- -3'
miRNA:   3'- -ACGGUCuAGCGCU--CGuCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 7615 0.71 0.361232
Target:  5'- aUGCCcugcGAUUGCGucuGCAGCaccuggaacagcgcgACGACUUCg -3'
miRNA:   3'- -ACGGu---CUAGCGCu--CGUCG---------------UGCUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.