miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 39648 0.71 0.363865
Target:  5'- cUGCCGGAcgcgaacuucacggUCGcCGAgGCGGCGCG-CUUCc -3'
miRNA:   3'- -ACGGUCU--------------AGC-GCU-CGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 1206 0.71 0.375428
Target:  5'- gUGCaacGUCGCGcGCAGCACGGCa-- -3'
miRNA:   3'- -ACGgucUAGCGCuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 18119 0.71 0.38449
Target:  5'- cUGCgCAGca-GCGGGCAGCGCGAUc-- -3'
miRNA:   3'- -ACG-GUCuagCGCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 39253 0.71 0.38449
Target:  5'- cUGCCGGugcagCGCGcGCAGCACgGGCggCa -3'
miRNA:   3'- -ACGGUCua---GCGCuCGUCGUG-CUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 31196 0.7 0.393697
Target:  5'- cGCCGGGcucgcgCGCGAGCAGCAacucgcgccgcUGACg-- -3'
miRNA:   3'- aCGGUCUa-----GCGCUCGUCGU-----------GCUGaag -5'
17178 5' -55.2 NC_004333.2 + 779 0.7 0.412531
Target:  5'- cGCCAcGGcgcUCGCGGGCggcGGCACGAUcgCg -3'
miRNA:   3'- aCGGU-CU---AGCGCUCG---UCGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 9201 0.7 0.422156
Target:  5'- gUGUC-GAUCGCGGuGC-GCAcCGACUUCg -3'
miRNA:   3'- -ACGGuCUAGCGCU-CGuCGU-GCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 42203 0.69 0.441801
Target:  5'- gGCCcGuAUCGCcuGCGGCuCGACUUCg -3'
miRNA:   3'- aCGGuC-UAGCGcuCGUCGuGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 38634 0.69 0.451816
Target:  5'- gUGCCcguucuGAUCGgccCGGGCGGCACGggcaagucguACUUCg -3'
miRNA:   3'- -ACGGu-----CUAGC---GCUCGUCGUGC----------UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 13832 0.69 0.461955
Target:  5'- cGCCg---CGCGAGCGGCGCG-CggCg -3'
miRNA:   3'- aCGGucuaGCGCUCGUCGUGCuGaaG- -5'
17178 5' -55.2 NC_004333.2 + 41691 0.69 0.482581
Target:  5'- gUGCUcGA-CGCGGGCGGCA--ACUUCg -3'
miRNA:   3'- -ACGGuCUaGCGCUCGUCGUgcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 19352 0.69 0.482581
Target:  5'- gUGCUuGcUCGCGAGCAGCACcaggUCg -3'
miRNA:   3'- -ACGGuCuAGCGCUCGUCGUGcugaAG- -5'
17178 5' -55.2 NC_004333.2 + 28773 0.68 0.51325
Target:  5'- aUGCCGGAagucgugcugcUCGCGAucuggcaGCAGCACGcACc-- -3'
miRNA:   3'- -ACGGUCU-----------AGCGCU-------CGUCGUGC-UGaag -5'
17178 5' -55.2 NC_004333.2 + 37791 0.68 0.514322
Target:  5'- gGCCaAGGaUGCGaAGCGGCGCGAUg-- -3'
miRNA:   3'- aCGG-UCUaGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 42160 0.68 0.514322
Target:  5'- cGCCucGUCGC--GCAGCACGACg-- -3'
miRNA:   3'- aCGGucUAGCGcuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 20577 0.68 0.520774
Target:  5'- cGUCGGGUCGCGccgugguguuucuGCAgGCGCGGCUc- -3'
miRNA:   3'- aCGGUCUAGCGCu------------CGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 17656 0.68 0.525093
Target:  5'- ----cGAUUGCGAGUcGCGCGACUUg -3'
miRNA:   3'- acgguCUAGCGCUCGuCGUGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 3003 0.68 0.525093
Target:  5'- cGCCGGcgcguccgcCGCGAcGUAGCGCGcgaACUUCa -3'
miRNA:   3'- aCGGUCua-------GCGCU-CGUCGUGC---UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 20462 0.68 0.532683
Target:  5'- cGCCGG-UCGUGAcGCAGCcgguuagcgucccgGCGGCUg- -3'
miRNA:   3'- aCGGUCuAGCGCU-CGUCG--------------UGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 48085 0.68 0.535948
Target:  5'- cGCCAGAgcgCGCGGGCAagccagaacGCGcCGAUg-- -3'
miRNA:   3'- aCGGUCUa--GCGCUCGU---------CGU-GCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.