Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17178 | 5' | -55.2 | NC_004333.2 | + | 11263 | 0.66 | 0.674298 |
Target: 5'- cGCgCGGGUCGCGAGaaguggauUuucaacacgcaggucGGCAuCGACUUCg -3' miRNA: 3'- aCG-GUCUAGCGCUC--------G---------------UCGU-GCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 10087 | 0.66 | 0.669826 |
Target: 5'- gGUCGGAUCGCGGuacaggucGUAGaCGCGAUUcggaUCg -3' miRNA: 3'- aCGGUCUAGCGCU--------CGUC-GUGCUGA----AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 32617 | 0.66 | 0.658621 |
Target: 5'- cGCaguGAUcgaCGCGAGCGcgccGCGCGACgUCg -3' miRNA: 3'- aCGgu-CUA---GCGCUCGU----CGUGCUGaAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 38240 | 0.66 | 0.658621 |
Target: 5'- gGCCA--UUGCGAGCGGCgugccaagaucgGCGGCcgggUCg -3' miRNA: 3'- aCGGUcuAGCGCUCGUCG------------UGCUGa---AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 26723 | 0.66 | 0.658621 |
Target: 5'- aGCCGGcgCGaucacgcucaCGAGCGGCgguGCGACa-- -3' miRNA: 3'- aCGGUCuaGC----------GCUCGUCG---UGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 22396 | 0.66 | 0.658621 |
Target: 5'- cUGCCAGGUCGa-GGCuuCGCGGCg-- -3' miRNA: 3'- -ACGGUCUAGCgcUCGucGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 19556 | 0.66 | 0.658621 |
Target: 5'- cGCCGG-UCGCacGGuCGGCGCGGCa-- -3' miRNA: 3'- aCGGUCuAGCGc-UC-GUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 16860 | 0.66 | 0.64739 |
Target: 5'- gGCCAaggcGAUCGaCGGGCgacuguucGGCACGGCc-- -3' miRNA: 3'- aCGGU----CUAGC-GCUCG--------UCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 40854 | 0.66 | 0.64739 |
Target: 5'- cGCCuucuGGUCGCcGGCGauggucGCGCGACUc- -3' miRNA: 3'- aCGGu---CUAGCGcUCGU------CGUGCUGAag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 19772 | 0.66 | 0.64739 |
Target: 5'- cGCC-GAgcaCGCGAGCAGCAUaAUcgUCa -3' miRNA: 3'- aCGGuCUa--GCGCUCGUCGUGcUGa-AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 13950 | 0.66 | 0.64739 |
Target: 5'- gUGCCGGccgacuUCGC--GCGGCGCGGCg-- -3' miRNA: 3'- -ACGGUCu-----AGCGcuCGUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 25016 | 0.66 | 0.64739 |
Target: 5'- aGCUcGAUUGCGGGU---GCGGCUUCu -3' miRNA: 3'- aCGGuCUAGCGCUCGucgUGCUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 43313 | 0.66 | 0.646266 |
Target: 5'- cUGgCAGAUgcggCGCGGGCAugcgaacGCACGGCa-- -3' miRNA: 3'- -ACgGUCUA----GCGCUCGU-------CGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 15707 | 0.66 | 0.646266 |
Target: 5'- aGCCgugaucgAGGUCGCcaaCGGCACGACgUUCg -3' miRNA: 3'- aCGG-------UCUAGCGcucGUCGUGCUG-AAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 20412 | 0.66 | 0.636145 |
Target: 5'- aGCCGG-UCGCGGuacccGuCGGCACGGCc-- -3' miRNA: 3'- aCGGUCuAGCGCU-----C-GUCGUGCUGaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 41978 | 0.66 | 0.636145 |
Target: 5'- cGCCAG--UGCGGGCGaccGCGCcaaGGCUUCc -3' miRNA: 3'- aCGGUCuaGCGCUCGU---CGUG---CUGAAG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 20960 | 0.66 | 0.636145 |
Target: 5'- gGCCGGAcgcaaaCGCGcGCGGCGCGGg--- -3' miRNA: 3'- aCGGUCUa-----GCGCuCGUCGUGCUgaag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 27250 | 0.66 | 0.636145 |
Target: 5'- cGCCAcaccUCGgGGGCAcGCAUGGCUgaUCg -3' miRNA: 3'- aCGGUcu--AGCgCUCGU-CGUGCUGA--AG- -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 29957 | 0.66 | 0.636145 |
Target: 5'- gGCCcGAUCGCGcAGCGcuucGCcgACGACUa- -3' miRNA: 3'- aCGGuCUAGCGC-UCGU----CG--UGCUGAag -5' |
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17178 | 5' | -55.2 | NC_004333.2 | + | 5154 | 0.66 | 0.624896 |
Target: 5'- cGCCcguGUUGuCGAGCAGCGCaGCUUg -3' miRNA: 3'- aCGGuc-UAGC-GCUCGUCGUGcUGAAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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