miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 46850 0.66 0.624896
Target:  5'- cGCuUGGAcgUGcCGAGCAGCGCGGCg-- -3'
miRNA:   3'- aCG-GUCUa-GC-GCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 11129 0.67 0.613653
Target:  5'- cGCC---UCGcCGGGCAGCACGAa--- -3'
miRNA:   3'- aCGGucuAGC-GCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 11322 0.67 0.613653
Target:  5'- uUGCaCuGGUCGCGcgcgaugaaGGCGGCGCGG-UUCg -3'
miRNA:   3'- -ACG-GuCUAGCGC---------UCGUCGUGCUgAAG- -5'
17178 5' -55.2 NC_004333.2 + 26685 0.67 0.613653
Target:  5'- cGUCAGGUCGCcAGguGUAUGGaugUCg -3'
miRNA:   3'- aCGGUCUAGCGcUCguCGUGCUga-AG- -5'
17178 5' -55.2 NC_004333.2 + 38078 0.67 0.613653
Target:  5'- gGCCgAGAUCGUGAuGCuGaACGGCUUa -3'
miRNA:   3'- aCGG-UCUAGCGCU-CGuCgUGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 30305 0.67 0.613653
Target:  5'- cGCaCuGAUCGCGcGCGGCGCG-Cg-- -3'
miRNA:   3'- aCG-GuCUAGCGCuCGUCGUGCuGaag -5'
17178 5' -55.2 NC_004333.2 + 4558 0.67 0.613653
Target:  5'- gGCCAGAUCGgGcaGGCgaugaAGgACGACaUCa -3'
miRNA:   3'- aCGGUCUAGCgC--UCG-----UCgUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 2381 0.67 0.613653
Target:  5'- cGCCAGuucaaCGCGGGCGuGCcggccacgguacACGACUUg -3'
miRNA:   3'- aCGGUCua---GCGCUCGU-CG------------UGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 14264 0.67 0.602427
Target:  5'- aGCCGa---GCG-GCGGCACGcCUUCg -3'
miRNA:   3'- aCGGUcuagCGCuCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 32057 0.67 0.602427
Target:  5'- cGCU--AUCGgacuauccgacCGAGCAGgGCGGCUUCg -3'
miRNA:   3'- aCGGucUAGC-----------GCUCGUCgUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 11462 0.67 0.602427
Target:  5'- cUGCgAGAUCgaGCGAauCAGCGCGACg-- -3'
miRNA:   3'- -ACGgUCUAG--CGCUc-GUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 39861 0.67 0.591228
Target:  5'- gGCCAcagCGCGAGCGGCGuCGG--UCg -3'
miRNA:   3'- aCGGUcuaGCGCUCGUCGU-GCUgaAG- -5'
17178 5' -55.2 NC_004333.2 + 21718 0.67 0.591228
Target:  5'- gGCC-GAUcugCGCGcGCAGCAUGcCUUCc -3'
miRNA:   3'- aCGGuCUA---GCGCuCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39318 0.67 0.591228
Target:  5'- aGCCGauUCGCucggcGGCGGCGCG-CUUCu -3'
miRNA:   3'- aCGGUcuAGCGc----UCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 11724 0.67 0.591228
Target:  5'- cGCCug--CGCGAcuacugGCAGCGCuACUUCg -3'
miRNA:   3'- aCGGucuaGCGCU------CGUCGUGcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 47256 0.67 0.580065
Target:  5'- gUGCCucugcugCGCG-GCAGCGCGuuCUUCc -3'
miRNA:   3'- -ACGGucua---GCGCuCGUCGUGCu-GAAG- -5'
17178 5' -55.2 NC_004333.2 + 31393 0.67 0.580065
Target:  5'- gGCCGGcAUUGCGGGCGccguGCuCGGCgUCg -3'
miRNA:   3'- aCGGUC-UAGCGCUCGU----CGuGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 9151 0.67 0.565622
Target:  5'- aGCCAGAUuuacCGCGAGgcgcucacgcagauCGGCGuCGACgugUCg -3'
miRNA:   3'- aCGGUCUA----GCGCUC--------------GUCGU-GCUGa--AG- -5'
17178 5' -55.2 NC_004333.2 + 24814 0.67 0.557883
Target:  5'- cGCCGcguUCGUGAGCGGCuucuCGACc-- -3'
miRNA:   3'- aCGGUcu-AGCGCUCGUCGu---GCUGaag -5'
17178 5' -55.2 NC_004333.2 + 21241 0.67 0.557883
Target:  5'- gGCCGGccUGCG-GCAGCGCGAag-Cg -3'
miRNA:   3'- aCGGUCuaGCGCuCGUCGUGCUgaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.