miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 779 0.7 0.412531
Target:  5'- cGCCAcGGcgcUCGCGGGCggcGGCACGAUcgCg -3'
miRNA:   3'- aCGGU-CU---AGCGCUCG---UCGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 1206 0.71 0.375428
Target:  5'- gUGCaacGUCGCGcGCAGCACGGCa-- -3'
miRNA:   3'- -ACGgucUAGCGCuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 2381 0.67 0.613653
Target:  5'- cGCCAGuucaaCGCGGGCGuGCcggccacgguacACGACUUg -3'
miRNA:   3'- aCGGUCua---GCGCUCGU-CG------------UGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 3003 0.68 0.525093
Target:  5'- cGCCGGcgcguccgcCGCGAcGUAGCGCGcgaACUUCa -3'
miRNA:   3'- aCGGUCua-------GCGCU-CGUCGUGC---UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 4558 0.67 0.613653
Target:  5'- gGCCAGAUCGgGcaGGCgaugaAGgACGACaUCa -3'
miRNA:   3'- aCGGUCUAGCgC--UCG-----UCgUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 5154 0.66 0.624896
Target:  5'- cGCCcguGUUGuCGAGCAGCGCaGCUUg -3'
miRNA:   3'- aCGGuc-UAGC-GCUCGUCGUGcUGAAg -5'
17178 5' -55.2 NC_004333.2 + 7615 0.71 0.361232
Target:  5'- aUGCCcugcGAUUGCGucuGCAGCaccuggaacagcgcgACGACUUCg -3'
miRNA:   3'- -ACGGu---CUAGCGCu--CGUCG---------------UGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 8602 0.72 0.300538
Target:  5'- aUGCCGG-UCGCGcuguucGGCAcGgGCGACUUCu -3'
miRNA:   3'- -ACGGUCuAGCGC------UCGU-CgUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 8971 0.77 0.153305
Target:  5'- gGCUGGAUCGUGGGCcguGCGCGGCggCg -3'
miRNA:   3'- aCGGUCUAGCGCUCGu--CGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 9151 0.67 0.565622
Target:  5'- aGCCAGAUuuacCGCGAGgcgcucacgcagauCGGCGuCGACgugUCg -3'
miRNA:   3'- aCGGUCUA----GCGCUC--------------GUCGU-GCUGa--AG- -5'
17178 5' -55.2 NC_004333.2 + 9201 0.7 0.422156
Target:  5'- gUGUC-GAUCGCGGuGC-GCAcCGACUUCg -3'
miRNA:   3'- -ACGGuCUAGCGCU-CGuCGU-GCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 10087 0.66 0.669826
Target:  5'- gGUCGGAUCGCGGuacaggucGUAGaCGCGAUUcggaUCg -3'
miRNA:   3'- aCGGUCUAGCGCU--------CGUC-GUGCUGA----AG- -5'
17178 5' -55.2 NC_004333.2 + 11129 0.67 0.613653
Target:  5'- cGCC---UCGcCGGGCAGCACGAa--- -3'
miRNA:   3'- aCGGucuAGC-GCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 11263 0.66 0.674298
Target:  5'- cGCgCGGGUCGCGAGaaguggauUuucaacacgcaggucGGCAuCGACUUCg -3'
miRNA:   3'- aCG-GUCUAGCGCUC--------G---------------UCGU-GCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 11322 0.67 0.613653
Target:  5'- uUGCaCuGGUCGCGcgcgaugaaGGCGGCGCGG-UUCg -3'
miRNA:   3'- -ACG-GuCUAGCGC---------UCGUCGUGCUgAAG- -5'
17178 5' -55.2 NC_004333.2 + 11462 0.67 0.602427
Target:  5'- cUGCgAGAUCgaGCGAauCAGCGCGACg-- -3'
miRNA:   3'- -ACGgUCUAG--CGCUc-GUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 11724 0.67 0.591228
Target:  5'- cGCCug--CGCGAcuacugGCAGCGCuACUUCg -3'
miRNA:   3'- aCGGucuaGCGCU------CGUCGUGcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 12450 0.67 0.557883
Target:  5'- cGCCGGGcggggCGCGGGCGGgcgcUACGGCg-- -3'
miRNA:   3'- aCGGUCUa----GCGCUCGUC----GUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 13658 0.73 0.285547
Target:  5'- gGgCAGcugCGCGAGCAGCACGAg--- -3'
miRNA:   3'- aCgGUCua-GCGCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 13832 0.69 0.461955
Target:  5'- cGCCg---CGCGAGCGGCGCG-CggCg -3'
miRNA:   3'- aCGGucuaGCGCUCGUCGUGCuGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.