miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 13950 0.66 0.64739
Target:  5'- gUGCCGGccgacuUCGC--GCGGCGCGGCg-- -3'
miRNA:   3'- -ACGGUCu-----AGCGcuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 13977 0.79 0.1058
Target:  5'- gGCCGGugcgCGCGAGCuGCGCGcGCUUCu -3'
miRNA:   3'- aCGGUCua--GCGCUCGuCGUGC-UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 14179 0.75 0.201136
Target:  5'- aUGCCGGGUCGCucgucgggaugcGGCAGCAUGACg-- -3'
miRNA:   3'- -ACGGUCUAGCGc-----------UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 14264 0.67 0.602427
Target:  5'- aGCCGa---GCG-GCGGCACGcCUUCg -3'
miRNA:   3'- aCGGUcuagCGCuCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 15707 0.66 0.646266
Target:  5'- aGCCgugaucgAGGUCGCcaaCGGCACGACgUUCg -3'
miRNA:   3'- aCGG-------UCUAGCGcucGUCGUGCUG-AAG- -5'
17178 5' -55.2 NC_004333.2 + 16860 0.66 0.64739
Target:  5'- gGCCAaggcGAUCGaCGGGCgacuguucGGCACGGCc-- -3'
miRNA:   3'- aCGGU----CUAGC-GCUCG--------UCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 17656 0.68 0.525093
Target:  5'- ----cGAUUGCGAGUcGCGCGACUUg -3'
miRNA:   3'- acgguCUAGCGCUCGuCGUGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 18119 0.71 0.38449
Target:  5'- cUGCgCAGca-GCGGGCAGCGCGAUc-- -3'
miRNA:   3'- -ACG-GUCuagCGCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 18482 0.68 0.551274
Target:  5'- cGCC-GAUCGCGAGgcguugcgcuucggaCGGCACGAg--- -3'
miRNA:   3'- aCGGuCUAGCGCUC---------------GUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 19352 0.69 0.482581
Target:  5'- gUGCUuGcUCGCGAGCAGCACcaggUCg -3'
miRNA:   3'- -ACGGuCuAGCGCUCGUCGUGcugaAG- -5'
17178 5' -55.2 NC_004333.2 + 19495 0.76 0.166735
Target:  5'- cGCguGAacgUCGCGGGUAGCGCGGCg-- -3'
miRNA:   3'- aCGguCU---AGCGCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 19556 0.66 0.658621
Target:  5'- cGCCGG-UCGCacGGuCGGCGCGGCa-- -3'
miRNA:   3'- aCGGUCuAGCGc-UC-GUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 19772 0.66 0.64739
Target:  5'- cGCC-GAgcaCGCGAGCAGCAUaAUcgUCa -3'
miRNA:   3'- aCGGuCUa--GCGCUCGUCGUGcUGa-AG- -5'
17178 5' -55.2 NC_004333.2 + 20412 0.66 0.636145
Target:  5'- aGCCGG-UCGCGGuacccGuCGGCACGGCc-- -3'
miRNA:   3'- aCGGUCuAGCGCU-----C-GUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 20462 0.68 0.532683
Target:  5'- cGCCGG-UCGUGAcGCAGCcgguuagcgucccgGCGGCUg- -3'
miRNA:   3'- aCGGUCuAGCGCU-CGUCG--------------UGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 20577 0.68 0.520774
Target:  5'- cGUCGGGUCGCGccgugguguuucuGCAgGCGCGGCUc- -3'
miRNA:   3'- aCGGUCUAGCGCu------------CGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 20592 0.74 0.244121
Target:  5'- gGCCGcca-GCGAGCGGCGCGGCggCg -3'
miRNA:   3'- aCGGUcuagCGCUCGUCGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 20960 0.66 0.636145
Target:  5'- gGCCGGAcgcaaaCGCGcGCGGCGCGGg--- -3'
miRNA:   3'- aCGGUCUa-----GCGCuCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 21241 0.67 0.557883
Target:  5'- gGCCGGccUGCG-GCAGCGCGAag-Cg -3'
miRNA:   3'- aCGGUCuaGCGCuCGUCGUGCUgaaG- -5'
17178 5' -55.2 NC_004333.2 + 21718 0.67 0.591228
Target:  5'- gGCC-GAUcugCGCGcGCAGCAUGcCUUCc -3'
miRNA:   3'- aCGGuCUA---GCGCuCGUCGUGCuGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.