miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 48146 0.75 0.202236
Target:  5'- cGCCucGUCGgcacCGAGCAGCACGACaUCg -3'
miRNA:   3'- aCGGucUAGC----GCUCGUCGUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 48085 0.68 0.535948
Target:  5'- cGCCAGAgcgCGCGGGCAagccagaacGCGcCGAUg-- -3'
miRNA:   3'- aCGGUCUa--GCGCUCGU---------CGU-GCUGaag -5'
17178 5' -55.2 NC_004333.2 + 47256 0.67 0.580065
Target:  5'- gUGCCucugcugCGCG-GCAGCGCGuuCUUCc -3'
miRNA:   3'- -ACGGucua---GCGCuCGUCGUGCu-GAAG- -5'
17178 5' -55.2 NC_004333.2 + 46850 0.66 0.624896
Target:  5'- cGCuUGGAcgUGcCGAGCAGCGCGGCg-- -3'
miRNA:   3'- aCG-GUCUa-GC-GCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 43313 0.66 0.646266
Target:  5'- cUGgCAGAUgcggCGCGGGCAugcgaacGCACGGCa-- -3'
miRNA:   3'- -ACgGUCUA----GCGCUCGU-------CGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 42203 0.69 0.441801
Target:  5'- gGCCcGuAUCGCcuGCGGCuCGACUUCg -3'
miRNA:   3'- aCGGuC-UAGCGcuCGUCGuGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 42160 0.68 0.514322
Target:  5'- cGCCucGUCGC--GCAGCACGACg-- -3'
miRNA:   3'- aCGGucUAGCGcuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 41978 0.66 0.636145
Target:  5'- cGCCAG--UGCGGGCGaccGCGCcaaGGCUUCc -3'
miRNA:   3'- aCGGUCuaGCGCUCGU---CGUG---CUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 41691 0.69 0.482581
Target:  5'- gUGCUcGA-CGCGGGCGGCA--ACUUCg -3'
miRNA:   3'- -ACGGuCUaGCGCUCGUCGUgcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 41621 0.74 0.250662
Target:  5'- aGCCGG-UCGUGAGCAuCGCGACg-- -3'
miRNA:   3'- aCGGUCuAGCGCUCGUcGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 40854 0.66 0.64739
Target:  5'- cGCCuucuGGUCGCcGGCGauggucGCGCGACUc- -3'
miRNA:   3'- aCGGu---CUAGCGcUCGU------CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 39861 0.67 0.591228
Target:  5'- gGCCAcagCGCGAGCGGCGuCGG--UCg -3'
miRNA:   3'- aCGGUcuaGCGCUCGUCGU-GCUgaAG- -5'
17178 5' -55.2 NC_004333.2 + 39648 0.71 0.363865
Target:  5'- cUGCCGGAcgcgaacuucacggUCGcCGAgGCGGCGCG-CUUCc -3'
miRNA:   3'- -ACGGUCU--------------AGC-GCU-CGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39318 0.67 0.591228
Target:  5'- aGCCGauUCGCucggcGGCGGCGCG-CUUCu -3'
miRNA:   3'- aCGGUcuAGCGc----UCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39253 0.71 0.38449
Target:  5'- cUGCCGGugcagCGCGcGCAGCACgGGCggCa -3'
miRNA:   3'- -ACGGUCua---GCGCuCGUCGUG-CUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 39057 0.74 0.219368
Target:  5'- aGCCGGAcgGCGAGUAcGCGCGACUc- -3'
miRNA:   3'- aCGGUCUagCGCUCGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 38634 0.69 0.451816
Target:  5'- gUGCCcguucuGAUCGgccCGGGCGGCACGggcaagucguACUUCg -3'
miRNA:   3'- -ACGGu-----CUAGC---GCUCGUCGUGC----------UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 38240 0.66 0.658621
Target:  5'- gGCCA--UUGCGAGCGGCgugccaagaucgGCGGCcgggUCg -3'
miRNA:   3'- aCGGUcuAGCGCUCGUCG------------UGCUGa---AG- -5'
17178 5' -55.2 NC_004333.2 + 38078 0.67 0.613653
Target:  5'- gGCCgAGAUCGUGAuGCuGaACGGCUUa -3'
miRNA:   3'- aCGG-UCUAGCGCU-CGuCgUGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 37791 0.68 0.514322
Target:  5'- gGCCaAGGaUGCGaAGCGGCGCGAUg-- -3'
miRNA:   3'- aCGG-UCUaGCGC-UCGUCGUGCUGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.