miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 28694 1.09 0.000789
Target:  5'- cUGCCAGAUCGCGAGCAGCACGACUUCc -3'
miRNA:   3'- -ACGGUCUAGCGCUCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 41691 0.69 0.482581
Target:  5'- gUGCUcGA-CGCGGGCGGCA--ACUUCg -3'
miRNA:   3'- -ACGGuCUaGCGCUCGUCGUgcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 20577 0.68 0.520774
Target:  5'- cGUCGGGUCGCGccgugguguuucuGCAgGCGCGGCUc- -3'
miRNA:   3'- aCGGUCUAGCGCu------------CGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 10087 0.66 0.669826
Target:  5'- gGUCGGAUCGCGGuacaggucGUAGaCGCGAUUcggaUCg -3'
miRNA:   3'- aCGGUCUAGCGCU--------CGUC-GUGCUGA----AG- -5'
17178 5' -55.2 NC_004333.2 + 32344 0.78 0.121819
Target:  5'- cUGCCGGGUCGCugcccgauagcguGcGCAGCACGACgUUCa -3'
miRNA:   3'- -ACGGUCUAGCG-------------CuCGUCGUGCUG-AAG- -5'
17178 5' -55.2 NC_004333.2 + 8971 0.77 0.153305
Target:  5'- gGCUGGAUCGUGGGCcguGCGCGGCggCg -3'
miRNA:   3'- aCGGUCUAGCGCUCGu--CGUGCUGaaG- -5'
17178 5' -55.2 NC_004333.2 + 32952 0.75 0.213523
Target:  5'- gGCguGcgCGuCGGGCAGCuuuGCGACUUCg -3'
miRNA:   3'- aCGguCuaGC-GCUCGUCG---UGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39057 0.74 0.219368
Target:  5'- aGCCGGAcgGCGAGUAcGCGCGACUc- -3'
miRNA:   3'- aCGGUCUagCGCUCGU-CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 31227 0.71 0.340647
Target:  5'- aUGCCGG-UCGCGAcgGCcGCGCGGCg-- -3'
miRNA:   3'- -ACGGUCuAGCGCU--CGuCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 38634 0.69 0.451816
Target:  5'- gUGCCcguucuGAUCGgccCGGGCGGCACGggcaagucguACUUCg -3'
miRNA:   3'- -ACGGu-----CUAGC---GCUCGUCGUGC----------UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39648 0.71 0.363865
Target:  5'- cUGCCGGAcgcgaacuucacggUCGcCGAgGCGGCGCG-CUUCc -3'
miRNA:   3'- -ACGGUCU--------------AGC-GCU-CGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 28996 0.72 0.332325
Target:  5'- cGCCGGGUCgGCGuGCGcaucgcGCGCGGCUa- -3'
miRNA:   3'- aCGGUCUAG-CGCuCGU------CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 28775 0.88 0.025438
Target:  5'- cGCgCGGGUCGCG-GCGGCGCGACUUCc -3'
miRNA:   3'- aCG-GUCUAGCGCuCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 9201 0.7 0.422156
Target:  5'- gUGUC-GAUCGCGGuGC-GCAcCGACUUCg -3'
miRNA:   3'- -ACGGuCUAGCGCU-CGuCGU-GCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 30621 0.87 0.0287
Target:  5'- cGCCAGGUCGUGcAGCAGCGCGGCa-- -3'
miRNA:   3'- aCGGUCUAGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 13658 0.73 0.285547
Target:  5'- gGgCAGcugCGCGAGCAGCACGAg--- -3'
miRNA:   3'- aCgGUCua-GCGCUCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 42203 0.69 0.441801
Target:  5'- gGCCcGuAUCGCcuGCGGCuCGACUUCg -3'
miRNA:   3'- aCGGuC-UAGCGcuCGUCGuGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 37791 0.68 0.514322
Target:  5'- gGCCaAGGaUGCGaAGCGGCGCGAUg-- -3'
miRNA:   3'- aCGG-UCUaGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 13977 0.79 0.1058
Target:  5'- gGCCGGugcgCGCGAGCuGCGCGcGCUUCu -3'
miRNA:   3'- aCGGUCua--GCGCUCGuCGUGC-UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 14179 0.75 0.201136
Target:  5'- aUGCCGGGUCGCucgucgggaugcGGCAGCAUGACg-- -3'
miRNA:   3'- -ACGGUCUAGCGc-----------UCGUCGUGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.