miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 9201 0.7 0.422156
Target:  5'- gUGUC-GAUCGCGGuGC-GCAcCGACUUCg -3'
miRNA:   3'- -ACGGuCUAGCGCU-CGuCGU-GCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 13977 0.79 0.1058
Target:  5'- gGCCGGugcgCGCGAGCuGCGCGcGCUUCu -3'
miRNA:   3'- aCGGUCua--GCGCUCGuCGUGC-UGAAG- -5'
17178 5' -55.2 NC_004333.2 + 40854 0.66 0.64739
Target:  5'- cGCCuucuGGUCGCcGGCGauggucGCGCGACUc- -3'
miRNA:   3'- aCGGu---CUAGCGcUCGU------CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 26685 0.67 0.613653
Target:  5'- cGUCAGGUCGCcAGguGUAUGGaugUCg -3'
miRNA:   3'- aCGGUCUAGCGcUCguCGUGCUga-AG- -5'
17178 5' -55.2 NC_004333.2 + 41691 0.69 0.482581
Target:  5'- gUGCUcGA-CGCGGGCGGCA--ACUUCg -3'
miRNA:   3'- -ACGGuCUaGCGCUCGUCGUgcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 30621 0.87 0.0287
Target:  5'- cGCCAGGUCGUGcAGCAGCGCGGCa-- -3'
miRNA:   3'- aCGGUCUAGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 11322 0.67 0.613653
Target:  5'- uUGCaCuGGUCGCGcgcgaugaaGGCGGCGCGG-UUCg -3'
miRNA:   3'- -ACG-GuCUAGCGC---------UCGUCGUGCUgAAG- -5'
17178 5' -55.2 NC_004333.2 + 28775 0.88 0.025438
Target:  5'- cGCgCGGGUCGCG-GCGGCGCGACUUCc -3'
miRNA:   3'- aCG-GUCUAGCGCuCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 28694 1.09 0.000789
Target:  5'- cUGCCAGAUCGCGAGCAGCACGACUUCc -3'
miRNA:   3'- -ACGGUCUAGCGCUCGUCGUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 28996 0.72 0.332325
Target:  5'- cGCCGGGUCgGCGuGCGcaucgcGCGCGGCUa- -3'
miRNA:   3'- aCGGUCUAG-CGCuCGU------CGUGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 37791 0.68 0.514322
Target:  5'- gGCCaAGGaUGCGaAGCGGCGCGAUg-- -3'
miRNA:   3'- aCGG-UCUaGCGC-UCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 39318 0.67 0.591228
Target:  5'- aGCCGauUCGCucggcGGCGGCGCG-CUUCu -3'
miRNA:   3'- aCGGUcuAGCGc----UCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 38078 0.67 0.613653
Target:  5'- gGCCgAGAUCGUGAuGCuGaACGGCUUa -3'
miRNA:   3'- aCGG-UCUAGCGCU-CGuCgUGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 20960 0.66 0.636145
Target:  5'- gGCCGGAcgcaaaCGCGcGCGGCGCGGg--- -3'
miRNA:   3'- aCGGUCUa-----GCGCuCGUCGUGCUgaag -5'
17178 5' -55.2 NC_004333.2 + 22396 0.66 0.658621
Target:  5'- cUGCCAGGUCGa-GGCuuCGCGGCg-- -3'
miRNA:   3'- -ACGGUCUAGCgcUCGucGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 31227 0.71 0.340647
Target:  5'- aUGCCGG-UCGCGAcgGCcGCGCGGCg-- -3'
miRNA:   3'- -ACGGUCuAGCGCU--CGuCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 32344 0.78 0.121819
Target:  5'- cUGCCGGGUCGCugcccgauagcguGcGCAGCACGACgUUCa -3'
miRNA:   3'- -ACGGUCUAGCG-------------CuCGUCGUGCUG-AAG- -5'
17178 5' -55.2 NC_004333.2 + 32952 0.75 0.213523
Target:  5'- gGCguGcgCGuCGGGCAGCuuuGCGACUUCg -3'
miRNA:   3'- aCGguCuaGC-GCUCGUCG---UGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 34522 0.68 0.535948
Target:  5'- -uUCAGGUCuaugauGCGGGCGGCcucAUGGCUUCg -3'
miRNA:   3'- acGGUCUAG------CGCUCGUCG---UGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 2381 0.67 0.613653
Target:  5'- cGCCAGuucaaCGCGGGCGuGCcggccacgguacACGACUUg -3'
miRNA:   3'- aCGGUCua---GCGCUCGU-CG------------UGCUGAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.