miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17178 5' -55.2 NC_004333.2 + 31393 0.67 0.580065
Target:  5'- gGCCGGcAUUGCGGGCGccguGCuCGGCgUCg -3'
miRNA:   3'- aCGGUC-UAGCGCUCGU----CGuGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 46850 0.66 0.624896
Target:  5'- cGCuUGGAcgUGcCGAGCAGCGCGGCg-- -3'
miRNA:   3'- aCG-GUCUa-GC-GCUCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 30305 0.67 0.613653
Target:  5'- cGCaCuGAUCGCGcGCGGCGCG-Cg-- -3'
miRNA:   3'- aCG-GuCUAGCGCuCGUCGUGCuGaag -5'
17178 5' -55.2 NC_004333.2 + 2381 0.67 0.613653
Target:  5'- cGCCAGuucaaCGCGGGCGuGCcggccacgguacACGACUUg -3'
miRNA:   3'- aCGGUCua---GCGCUCGU-CG------------UGCUGAAg -5'
17178 5' -55.2 NC_004333.2 + 4558 0.67 0.613653
Target:  5'- gGCCAGAUCGgGcaGGCgaugaAGgACGACaUCa -3'
miRNA:   3'- aCGGUCUAGCgC--UCG-----UCgUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 32057 0.67 0.602427
Target:  5'- cGCU--AUCGgacuauccgacCGAGCAGgGCGGCUUCg -3'
miRNA:   3'- aCGGucUAGC-----------GCUCGUCgUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 11724 0.67 0.591228
Target:  5'- cGCCug--CGCGAcuacugGCAGCGCuACUUCg -3'
miRNA:   3'- aCGGucuaGCGCU------CGUCGUGcUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 39861 0.67 0.591228
Target:  5'- gGCCAcagCGCGAGCGGCGuCGG--UCg -3'
miRNA:   3'- aCGGUcuaGCGCUCGUCGU-GCUgaAG- -5'
17178 5' -55.2 NC_004333.2 + 21718 0.67 0.591228
Target:  5'- gGCC-GAUcugCGCGcGCAGCAUGcCUUCc -3'
miRNA:   3'- aCGGuCUA---GCGCuCGUCGUGCuGAAG- -5'
17178 5' -55.2 NC_004333.2 + 27250 0.66 0.636145
Target:  5'- cGCCAcaccUCGgGGGCAcGCAUGGCUgaUCg -3'
miRNA:   3'- aCGGUcu--AGCgCUCGU-CGUGCUGA--AG- -5'
17178 5' -55.2 NC_004333.2 + 29957 0.66 0.636145
Target:  5'- gGCCcGAUCGCGcAGCGcuucGCcgACGACUa- -3'
miRNA:   3'- aCGGuCUAGCGC-UCGU----CG--UGCUGAag -5'
17178 5' -55.2 NC_004333.2 + 20412 0.66 0.636145
Target:  5'- aGCCGG-UCGCGGuacccGuCGGCACGGCc-- -3'
miRNA:   3'- aCGGUCuAGCGCU-----C-GUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 32617 0.66 0.658621
Target:  5'- cGCaguGAUcgaCGCGAGCGcgccGCGCGACgUCg -3'
miRNA:   3'- aCGgu-CUA---GCGCUCGU----CGUGCUGaAG- -5'
17178 5' -55.2 NC_004333.2 + 38240 0.66 0.658621
Target:  5'- gGCCA--UUGCGAGCGGCgugccaagaucgGCGGCcgggUCg -3'
miRNA:   3'- aCGGUcuAGCGCUCGUCG------------UGCUGa---AG- -5'
17178 5' -55.2 NC_004333.2 + 26723 0.66 0.658621
Target:  5'- aGCCGGcgCGaucacgcucaCGAGCGGCgguGCGACa-- -3'
miRNA:   3'- aCGGUCuaGC----------GCUCGUCG---UGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 19772 0.66 0.64739
Target:  5'- cGCC-GAgcaCGCGAGCAGCAUaAUcgUCa -3'
miRNA:   3'- aCGGuCUa--GCGCUCGUCGUGcUGa-AG- -5'
17178 5' -55.2 NC_004333.2 + 13950 0.66 0.64739
Target:  5'- gUGCCGGccgacuUCGC--GCGGCGCGGCg-- -3'
miRNA:   3'- -ACGGUCu-----AGCGcuCGUCGUGCUGaag -5'
17178 5' -55.2 NC_004333.2 + 25016 0.66 0.64739
Target:  5'- aGCUcGAUUGCGGGU---GCGGCUUCu -3'
miRNA:   3'- aCGGuCUAGCGCUCGucgUGCUGAAG- -5'
17178 5' -55.2 NC_004333.2 + 15707 0.66 0.646266
Target:  5'- aGCCgugaucgAGGUCGCcaaCGGCACGACgUUCg -3'
miRNA:   3'- aCGG-------UCUAGCGcucGUCGUGCUG-AAG- -5'
17178 5' -55.2 NC_004333.2 + 43313 0.66 0.646266
Target:  5'- cUGgCAGAUgcggCGCGGGCAugcgaacGCACGGCa-- -3'
miRNA:   3'- -ACgGUCUA----GCGCUCGU-------CGUGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.