miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17179 3' -66 NC_004333.2 + 6885 0.66 0.242142
Target:  5'- cAUCGaGCGGaUCGCGGCGacaGCGGCg -3'
miRNA:   3'- -UGGCgCGCCcAGCGCCGCcg-CGCUGa -5'
17179 3' -66 NC_004333.2 + 11710 0.66 0.242142
Target:  5'- cGCCGgGCGGcGU-GCuGGCGuccuGCGCGAUg -3'
miRNA:   3'- -UGGCgCGCC-CAgCG-CCGC----CGCGCUGa -5'
17179 3' -66 NC_004333.2 + 45405 0.66 0.241554
Target:  5'- gGCCGCagaccugGCacucGGUUucgGCGGCGGCGaCGGCg -3'
miRNA:   3'- -UGGCG-------CGc---CCAG---CGCCGCCGC-GCUGa -5'
17179 3' -66 NC_004333.2 + 32750 0.66 0.224449
Target:  5'- -aCGCGCaGGUCGCugccgccGGCcauaaGCGCGGCa -3'
miRNA:   3'- ugGCGCGcCCAGCG-------CCGc----CGCGCUGa -5'
17179 3' -66 NC_004333.2 + 38766 0.66 0.219522
Target:  5'- gGCgGCuGCGGGaauuucagCGCGGCGGCcagcugcuCGACg -3'
miRNA:   3'- -UGgCG-CGCCCa-------GCGCCGCCGc-------GCUGa -5'
17179 3' -66 NC_004333.2 + 19603 0.66 0.219522
Target:  5'- -aCGaCGCGaacaaGGUCaCGGCGaGCGCGGCg -3'
miRNA:   3'- ugGC-GCGC-----CCAGcGCCGC-CGCGCUGa -5'
17179 3' -66 NC_004333.2 + 44958 0.66 0.219522
Target:  5'- cCUGCGCGcGcaCGuCGGCGGC-CGACUg -3'
miRNA:   3'- uGGCGCGC-CcaGC-GCCGCCGcGCUGA- -5'
17179 3' -66 NC_004333.2 + 37422 0.66 0.214155
Target:  5'- uUUGCGCGGcGUgcaCGUGuacuGCGGCGUGACg -3'
miRNA:   3'- uGGCGCGCC-CA---GCGC----CGCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 38378 0.66 0.214155
Target:  5'- gUCGCGUgucGGGU-GCGcCGGCGUGACg -3'
miRNA:   3'- uGGCGCG---CCCAgCGCcGCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 18794 0.66 0.208902
Target:  5'- aACCGCGCuuaucgCGCGGCcgcagGGCGCGuGCUg -3'
miRNA:   3'- -UGGCGCGccca--GCGCCG-----CCGCGC-UGA- -5'
17179 3' -66 NC_004333.2 + 28829 0.66 0.208902
Target:  5'- cCCGCGCGGucgaCGCGGCGcucGCGCa--- -3'
miRNA:   3'- uGGCGCGCCca--GCGCCGC---CGCGcuga -5'
17179 3' -66 NC_004333.2 + 20214 0.66 0.208902
Target:  5'- gGCuCGCGCuu-UCGUGGCGGCgaucgaccGCGACUg -3'
miRNA:   3'- -UG-GCGCGcccAGCGCCGCCG--------CGCUGA- -5'
17179 3' -66 NC_004333.2 + 30755 0.67 0.198729
Target:  5'- uGCCGC-CGccg-GCGGCGGCGCGAa- -3'
miRNA:   3'- -UGGCGcGCccagCGCCGCCGCGCUga -5'
17179 3' -66 NC_004333.2 + 30065 0.67 0.188991
Target:  5'- uGCCaaaGCGCGGGUCGauGCcguaGCGcCGACg -3'
miRNA:   3'- -UGG---CGCGCCCAGCgcCGc---CGC-GCUGa -5'
17179 3' -66 NC_004333.2 + 26802 0.67 0.188991
Target:  5'- cGCCGaCGCaauGGGUCaaguuccUGGcCGGCGCGGCg -3'
miRNA:   3'- -UGGC-GCG---CCCAGc------GCC-GCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 28886 0.67 0.18428
Target:  5'- uGCCGCGCGa-UCGCGcuCGGCGCaGGCc -3'
miRNA:   3'- -UGGCGCGCccAGCGCc-GCCGCG-CUGa -5'
17179 3' -66 NC_004333.2 + 19501 0.67 0.18428
Target:  5'- gGCaCGCGCGugaacGUCGCGGguaGCGCGGCg -3'
miRNA:   3'- -UG-GCGCGCc----CAGCGCCgc-CGCGCUGa -5'
17179 3' -66 NC_004333.2 + 35252 0.67 0.182888
Target:  5'- uAUCGCGCaGGUuaugcaacugccggCGaUGGCGGUGCGAUg -3'
miRNA:   3'- -UGGCGCGcCCA--------------GC-GCCGCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 9602 0.67 0.179674
Target:  5'- aGCCgGCGCGGcaucggccgGUUGCgcaccggcugccGGCGGCGCGcCUg -3'
miRNA:   3'- -UGG-CGCGCC---------CAGCG------------CCGCCGCGCuGA- -5'
17179 3' -66 NC_004333.2 + 30634 0.68 0.17517
Target:  5'- aGCaGCGCGGcaaggCGCGGCGuGCGCuGCUc -3'
miRNA:   3'- -UGgCGCGCCca---GCGCCGC-CGCGcUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.