miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17179 3' -66 NC_004333.2 + 28772 1.06 0.000165
Target:  5'- gACCGCGCGGGUCGCGGCGGCGCGACUu -3'
miRNA:   3'- -UGGCGCGCCCAGCGCCGCCGCGCUGA- -5'
17179 3' -66 NC_004333.2 + 45027 0.79 0.024571
Target:  5'- gACCGCGCGuGG-CGCuGGCGGCGCG-Ca -3'
miRNA:   3'- -UGGCGCGC-CCaGCG-CCGCCGCGCuGa -5'
17179 3' -66 NC_004333.2 + 38951 0.78 0.029818
Target:  5'- aGCgGCGCGGGUgCGCGGaCGG-GCGGCg -3'
miRNA:   3'- -UGgCGCGCCCA-GCGCC-GCCgCGCUGa -5'
17179 3' -66 NC_004333.2 + 10871 0.76 0.041492
Target:  5'- cGCCGCGCGGGaagaaCGC--CGGCGCGACa -3'
miRNA:   3'- -UGGCGCGCCCa----GCGccGCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 4952 0.75 0.051651
Target:  5'- -gCGCGCGcuacauGGUCaGCGGCGGCaGCGGCa -3'
miRNA:   3'- ugGCGCGC------CCAG-CGCCGCCG-CGCUGa -5'
17179 3' -66 NC_004333.2 + 9997 0.74 0.05308
Target:  5'- uUUGCGCGGGUUGuCGGCcgucuGCGCGACg -3'
miRNA:   3'- uGGCGCGCCCAGC-GCCGc----CGCGCUGa -5'
17179 3' -66 NC_004333.2 + 20574 0.74 0.059028
Target:  5'- -gCGCGuCGGGUCGCGccgugguguuucuGCaGGCGCGGCUc -3'
miRNA:   3'- ugGCGC-GCCCAGCGC-------------CG-CCGCGCUGA- -5'
17179 3' -66 NC_004333.2 + 28993 0.73 0.062493
Target:  5'- gGCCGC-CGGGUCgGCGuGCGcaucgcGCGCGGCUa -3'
miRNA:   3'- -UGGCGcGCCCAG-CGC-CGC------CGCGCUGA- -5'
17179 3' -66 NC_004333.2 + 3083 0.73 0.067786
Target:  5'- uUCGCGCGcuacGUCGCGGCGGaCGCGcCg -3'
miRNA:   3'- uGGCGCGCc---CAGCGCCGCC-GCGCuGa -5'
17179 3' -66 NC_004333.2 + 13881 0.72 0.07842
Target:  5'- cGCCGCGCgaagucggccggcacGGGcugCGCGGCGGCugccGUGGCg -3'
miRNA:   3'- -UGGCGCG---------------CCCa--GCGCCGCCG----CGCUGa -5'
17179 3' -66 NC_004333.2 + 31299 0.72 0.079696
Target:  5'- cGCCGCGCGGccGUCGCGcCGGCaUGACc -3'
miRNA:   3'- -UGGCGCGCC--CAGCGCcGCCGcGCUGa -5'
17179 3' -66 NC_004333.2 + 32281 0.72 0.079696
Target:  5'- gAUgGCGCGGGUCgGCGGCGaUGuCGACg -3'
miRNA:   3'- -UGgCGCGCCCAG-CGCCGCcGC-GCUGa -5'
17179 3' -66 NC_004333.2 + 12450 0.72 0.081867
Target:  5'- cGCCGgGCGGGgCGCgGGCGgGCGCuACg -3'
miRNA:   3'- -UGGCgCGCCCaGCG-CCGC-CGCGcUGa -5'
17179 3' -66 NC_004333.2 + 30392 0.71 0.088485
Target:  5'- gGCCGCGCguauggcGGGUgGUGucGCaGGCGCGACg -3'
miRNA:   3'- -UGGCGCG-------CCCAgCGC--CG-CCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 19554 0.71 0.091126
Target:  5'- --gGCGCcGGUCGCacGGuCGGCGCGGCa -3'
miRNA:   3'- uggCGCGcCCAGCG--CC-GCCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 46997 0.71 0.091126
Target:  5'- -gCGCGCGaGGcuUCGCGGCGcuCGCGGCg -3'
miRNA:   3'- ugGCGCGC-CC--AGCGCCGCc-GCGCUGa -5'
17179 3' -66 NC_004333.2 + 37307 0.71 0.09612
Target:  5'- -aCGCGUuccagucGGUCGCGGCGGUGCucGACg -3'
miRNA:   3'- ugGCGCGc------CCAGCGCCGCCGCG--CUGa -5'
17179 3' -66 NC_004333.2 + 13832 0.71 0.098713
Target:  5'- cGCCGCGCGa---GCGGC-GCGCGGCg -3'
miRNA:   3'- -UGGCGCGCccagCGCCGcCGCGCUGa -5'
17179 3' -66 NC_004333.2 + 37258 0.71 0.101373
Target:  5'- cACCgGCGCGcGUCGUGaGCGGCGUGuCg -3'
miRNA:   3'- -UGG-CGCGCcCAGCGC-CGCCGCGCuGa -5'
17179 3' -66 NC_004333.2 + 37740 0.7 0.106895
Target:  5'- gGCCGacgaGCGGGUCG-GGCGcGCGCucGAUg -3'
miRNA:   3'- -UGGCg---CGCCCAGCgCCGC-CGCG--CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.