miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17179 5' -54.3 NC_004333.2 + 19833 0.66 0.76712
Target:  5'- --cGUGCGUUgGag-CGGCCGAUCGc -3'
miRNA:   3'- uauCACGCAGgUgcaGCUGGCUAGCc -5'
17179 5' -54.3 NC_004333.2 + 14712 0.66 0.76712
Target:  5'- -gAGUGCG-CCAag-CGGCaGGUCGGg -3'
miRNA:   3'- uaUCACGCaGGUgcaGCUGgCUAGCC- -5'
17179 5' -54.3 NC_004333.2 + 40371 0.66 0.76712
Target:  5'- -cGGUGCacacgCCGCG-CGGCCGAcUCGa -3'
miRNA:   3'- uaUCACGca---GGUGCaGCUGGCU-AGCc -5'
17179 5' -54.3 NC_004333.2 + 23521 0.66 0.76712
Target:  5'- ---aUGCGgucaaCCccgauACGUCGACCGAUcCGGc -3'
miRNA:   3'- uaucACGCa----GG-----UGCAGCUGGCUA-GCC- -5'
17179 5' -54.3 NC_004333.2 + 29836 0.66 0.756851
Target:  5'- ----cGCG-CCGCcaGUCGACUGAUCGu -3'
miRNA:   3'- uaucaCGCaGGUG--CAGCUGGCUAGCc -5'
17179 5' -54.3 NC_004333.2 + 3582 0.66 0.756851
Target:  5'- cAUAGUGCG-CCACaUCGcGgCGAUCGu -3'
miRNA:   3'- -UAUCACGCaGGUGcAGC-UgGCUAGCc -5'
17179 5' -54.3 NC_004333.2 + 8986 0.67 0.714604
Target:  5'- --cGUGCG-CgGCGgCGACCGAcgCGGc -3'
miRNA:   3'- uauCACGCaGgUGCaGCUGGCUa-GCC- -5'
17179 5' -54.3 NC_004333.2 + 15882 0.68 0.648992
Target:  5'- --cGUGCG-CagGCGUCGGCgCGAUCGa -3'
miRNA:   3'- uauCACGCaGg-UGCAGCUG-GCUAGCc -5'
17179 5' -54.3 NC_004333.2 + 2016 0.68 0.63794
Target:  5'- -aAG-GCGgcCCGCGUCG-CCGGUgCGGg -3'
miRNA:   3'- uaUCaCGCa-GGUGCAGCuGGCUA-GCC- -5'
17179 5' -54.3 NC_004333.2 + 40733 0.7 0.538284
Target:  5'- -gAGUGCG-CCGaacaguuCGUCGGCCGcuUCGGc -3'
miRNA:   3'- uaUCACGCaGGU-------GCAGCUGGCu-AGCC- -5'
17179 5' -54.3 NC_004333.2 + 32009 0.71 0.486735
Target:  5'- -aGGUGCGUCgCcCGUCG-UCGAUCGa -3'
miRNA:   3'- uaUCACGCAG-GuGCAGCuGGCUAGCc -5'
17179 5' -54.3 NC_004333.2 + 28761 0.78 0.171973
Target:  5'- ----aGCG-CCGCGUCGACCGcgCGGg -3'
miRNA:   3'- uaucaCGCaGGUGCAGCUGGCuaGCC- -5'
17179 5' -54.3 NC_004333.2 + 28809 1.09 0.001284
Target:  5'- uAUAGUGCGUCCACGUCGACCGAUCGGa -3'
miRNA:   3'- -UAUCACGCAGGUGCAGCUGGCUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.