miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1718 5' -59.7 NC_001347.2 + 157835 0.66 0.870899
Target:  5'- uGCGggGCcucaucgcagCCuuGCgCCGGUacGCCGGGa -3'
miRNA:   3'- -CGCuuUGa---------GGugCG-GGCCG--UGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 144423 0.66 0.870899
Target:  5'- -gGAGAUUCgACGUCCgcugccagauGGCACgGGGg -3'
miRNA:   3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5'
1718 5' -59.7 NC_001347.2 + 190998 0.66 0.856649
Target:  5'- cGCGA---UCCACGCuUCGuccuCGCCGGGUa -3'
miRNA:   3'- -CGCUuugAGGUGCG-GGCc---GUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 2384 0.66 0.84925
Target:  5'- cGCGAG--UCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCUUugAGgUGCGGGCcGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 228735 0.66 0.84925
Target:  5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3'
miRNA:   3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5'
1718 5' -59.7 NC_001347.2 + 41639 0.66 0.844727
Target:  5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3'
miRNA:   3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 76416 0.67 0.833933
Target:  5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 135782 0.67 0.829208
Target:  5'- cGCGGAccccgggucccguccAUUCCGCGgCgGGUggACCGGGa -3'
miRNA:   3'- -CGCUU---------------UGAGGUGCgGgCCG--UGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 128850 0.67 0.826026
Target:  5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3'
miRNA:   3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5'
1718 5' -59.7 NC_001347.2 + 63038 0.67 0.817962
Target:  5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3'
miRNA:   3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 155564 0.67 0.817962
Target:  5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3'
miRNA:   3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5'
1718 5' -59.7 NC_001347.2 + 199665 0.67 0.817962
Target:  5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 39624 0.67 0.817962
Target:  5'- cGCGGAcgcCUUCGuCGCCCGuGUGCCGcGGg -3'
miRNA:   3'- -CGCUUu--GAGGU-GCGGGC-CGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 150767 0.67 0.80139
Target:  5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3'
miRNA:   3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 165044 0.68 0.784272
Target:  5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3'
miRNA:   3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 38696 0.68 0.784272
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
1718 5' -59.7 NC_001347.2 + 6210 0.68 0.784272
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 112830 0.68 0.775528
Target:  5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3'
miRNA:   3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 129579 0.68 0.766669
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
1718 5' -59.7 NC_001347.2 + 38909 0.68 0.766669
Target:  5'- cGCGGAACcCgGCGCCa-GCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGgcCGUGGcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.