Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1718 | 5' | -59.7 | NC_001347.2 | + | 85608 | 1.09 | 0.002164 |
Target: 5'- cGCGAAACUCCACGCCCGGCACCGGGUg -3' miRNA: 3'- -CGCUUUGAGGUGCGGGCCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136289 | 0.77 | 0.303739 |
Target: 5'- cGCG--GC-CCAUGCCCGGCACgGGGc -3' miRNA: 3'- -CGCuuUGaGGUGCGGGCCGUGgCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136024 | 0.76 | 0.317195 |
Target: 5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3' miRNA: 3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 43079 | 0.75 | 0.375437 |
Target: 5'- aUGAgcAAUUCCuCGCCCGGCGCCGGc- -3' miRNA: 3'- cGCU--UUGAGGuGCGGGCCGUGGCCca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 142488 | 0.74 | 0.432009 |
Target: 5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3' miRNA: 3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 11783 | 0.74 | 0.432009 |
Target: 5'- aGUGccGCUCCACGCCgCGGCACCa--- -3' miRNA: 3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136079 | 0.74 | 0.440491 |
Target: 5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3' miRNA: 3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 37914 | 0.73 | 0.465608 |
Target: 5'- cGUGcgGCUCgGCGCCCacagcgcGGCGCgCGGGUg -3' miRNA: 3'- -CGCuuUGAGgUGCGGG-------CCGUG-GCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 36571 | 0.73 | 0.475329 |
Target: 5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3' miRNA: 3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 207652 | 0.73 | 0.484253 |
Target: 5'- gGCGAcGCUCCAUG-CCGGCGCCuaacGGUc -3' miRNA: 3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 178720 | 0.72 | 0.511487 |
Target: 5'- cCGggGCUCagccuucuCACGcCCCGGCGCaaCGGGUg -3' miRNA: 3'- cGCuuUGAG--------GUGC-GGGCCGUG--GCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 184402 | 0.71 | 0.57626 |
Target: 5'- uGCGggGCuUCUugGaCUcgugaagCGGCGCCGGGUc -3' miRNA: 3'- -CGCuuUG-AGGugC-GG-------GCCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 82322 | 0.71 | 0.596386 |
Target: 5'- uGCGGu-UUCCACGCCCaGUGCCGGu- -3' miRNA: 3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 88658 | 0.7 | 0.634958 |
Target: 5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 172036 | 0.7 | 0.634958 |
Target: 5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3' miRNA: 3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 21763 | 0.7 | 0.663888 |
Target: 5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3' miRNA: 3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 2353 | 0.69 | 0.683072 |
Target: 5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGa -3' miRNA: 3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 1478 | 0.69 | 0.683072 |
Target: 5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3' miRNA: 3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 1022 | 0.69 | 0.702106 |
Target: 5'- uGCGGcuacGACgacgCCGgGCCaCGGCguccACCGGGUa -3' miRNA: 3'- -CGCU----UUGa---GGUgCGG-GCCG----UGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136488 | 0.68 | 0.739484 |
Target: 5'- cGCG-GGC-CCugGCCCGcGCAugcgccCCGGGg -3' miRNA: 3'- -CGCuUUGaGGugCGGGC-CGU------GGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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