miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1718 5' -59.7 NC_001347.2 + 191216 0.68 0.757703
Target:  5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3'
miRNA:   3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5'
1718 5' -59.7 NC_001347.2 + 157930 0.68 0.756801
Target:  5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3'
miRNA:   3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 142432 0.68 0.748639
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 159276 0.68 0.739484
Target:  5'- gGCGAAACUgg-UGCUggCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGAgguGCGG--GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 136488 0.68 0.739484
Target:  5'- cGCG-GGC-CCugGCCCGcGCAugcgccCCGGGg -3'
miRNA:   3'- -CGCuUUGaGGugCGGGC-CGU------GGCCCa -5'
1718 5' -59.7 NC_001347.2 + 1022 0.69 0.702106
Target:  5'- uGCGGcuacGACgacgCCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCU----UUGa---GGUgCGG-GCCG----UGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 2353 0.69 0.683072
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGa -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 1478 0.69 0.683072
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 21763 0.7 0.663888
Target:  5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3'
miRNA:   3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 88658 0.7 0.634958
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
1718 5' -59.7 NC_001347.2 + 172036 0.7 0.634958
Target:  5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 82322 0.71 0.596386
Target:  5'- uGCGGu-UUCCACGCCCaGUGCCGGu- -3'
miRNA:   3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5'
1718 5' -59.7 NC_001347.2 + 184402 0.71 0.57626
Target:  5'- uGCGggGCuUCUugGaCUcgugaagCGGCGCCGGGUc -3'
miRNA:   3'- -CGCuuUG-AGGugC-GG-------GCCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 178720 0.72 0.511487
Target:  5'- cCGggGCUCagccuucuCACGcCCCGGCGCaaCGGGUg -3'
miRNA:   3'- cGCuuUGAG--------GUGC-GGGCCGUG--GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 207652 0.73 0.484253
Target:  5'- gGCGAcGCUCCAUG-CCGGCGCCuaacGGUc -3'
miRNA:   3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5'
1718 5' -59.7 NC_001347.2 + 36571 0.73 0.475329
Target:  5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3'
miRNA:   3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 37914 0.73 0.465608
Target:  5'- cGUGcgGCUCgGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAGgUGCGGG-------CCGUG-GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 136079 0.74 0.440491
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 11783 0.74 0.432009
Target:  5'- aGUGccGCUCCACGCCgCGGCACCa--- -3'
miRNA:   3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5'
1718 5' -59.7 NC_001347.2 + 142488 0.74 0.432009
Target:  5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3'
miRNA:   3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.