miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1718 5' -59.7 NC_001347.2 + 1022 0.69 0.702106
Target:  5'- uGCGGcuacGACgacgCCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCU----UUGa---GGUgCGG-GCCG----UGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 1478 0.69 0.683072
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 2353 0.69 0.683072
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGa -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 2384 0.66 0.84925
Target:  5'- cGCGAG--UCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCUUugAGgUGCGGGCcGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 6210 0.68 0.784272
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 11783 0.74 0.432009
Target:  5'- aGUGccGCUCCACGCCgCGGCACCa--- -3'
miRNA:   3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5'
1718 5' -59.7 NC_001347.2 + 21763 0.7 0.663888
Target:  5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3'
miRNA:   3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 36571 0.73 0.475329
Target:  5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3'
miRNA:   3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 37914 0.73 0.465608
Target:  5'- cGUGcgGCUCgGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAGgUGCGGG-------CCGUG-GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 38696 0.68 0.784272
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
1718 5' -59.7 NC_001347.2 + 38909 0.68 0.766669
Target:  5'- cGCGGAACcCgGCGCCa-GCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGgcCGUGGcCCA- -5'
1718 5' -59.7 NC_001347.2 + 39624 0.67 0.817962
Target:  5'- cGCGGAcgcCUUCGuCGCCCGuGUGCCGcGGg -3'
miRNA:   3'- -CGCUUu--GAGGU-GCGGGC-CGUGGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 41639 0.66 0.844727
Target:  5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3'
miRNA:   3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 43079 0.75 0.375437
Target:  5'- aUGAgcAAUUCCuCGCCCGGCGCCGGc- -3'
miRNA:   3'- cGCU--UUGAGGuGCGGGCCGUGGCCca -5'
1718 5' -59.7 NC_001347.2 + 63038 0.67 0.817962
Target:  5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3'
miRNA:   3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 76416 0.67 0.833933
Target:  5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5'
1718 5' -59.7 NC_001347.2 + 82322 0.71 0.596386
Target:  5'- uGCGGu-UUCCACGCCCaGUGCCGGu- -3'
miRNA:   3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5'
1718 5' -59.7 NC_001347.2 + 85608 1.09 0.002164
Target:  5'- cGCGAAACUCCACGCCCGGCACCGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUGCGGGCCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 88658 0.7 0.634958
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
1718 5' -59.7 NC_001347.2 + 112830 0.68 0.775528
Target:  5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3'
miRNA:   3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.