miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1718 5' -59.7 NC_001347.2 + 128850 0.67 0.826026
Target:  5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3'
miRNA:   3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5'
1718 5' -59.7 NC_001347.2 + 129579 0.68 0.766669
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
1718 5' -59.7 NC_001347.2 + 135782 0.67 0.829208
Target:  5'- cGCGGAccccgggucccguccAUUCCGCGgCgGGUggACCGGGa -3'
miRNA:   3'- -CGCUU---------------UGAGGUGCgGgCCG--UGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 136024 0.76 0.317195
Target:  5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3'
miRNA:   3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5'
1718 5' -59.7 NC_001347.2 + 136079 0.74 0.440491
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 136289 0.77 0.303739
Target:  5'- cGCG--GC-CCAUGCCCGGCACgGGGc -3'
miRNA:   3'- -CGCuuUGaGGUGCGGGCCGUGgCCCa -5'
1718 5' -59.7 NC_001347.2 + 136488 0.68 0.739484
Target:  5'- cGCG-GGC-CCugGCCCGcGCAugcgccCCGGGg -3'
miRNA:   3'- -CGCuUUGaGGugCGGGC-CGU------GGCCCa -5'
1718 5' -59.7 NC_001347.2 + 142432 0.68 0.748639
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 142488 0.74 0.432009
Target:  5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3'
miRNA:   3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5'
1718 5' -59.7 NC_001347.2 + 144423 0.66 0.870899
Target:  5'- -gGAGAUUCgACGUCCgcugccagauGGCACgGGGg -3'
miRNA:   3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5'
1718 5' -59.7 NC_001347.2 + 150767 0.67 0.80139
Target:  5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3'
miRNA:   3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 155564 0.67 0.817962
Target:  5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3'
miRNA:   3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5'
1718 5' -59.7 NC_001347.2 + 157835 0.66 0.870899
Target:  5'- uGCGggGCcucaucgcagCCuuGCgCCGGUacGCCGGGa -3'
miRNA:   3'- -CGCuuUGa---------GGugCG-GGCCG--UGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 157930 0.68 0.756801
Target:  5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3'
miRNA:   3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 159276 0.68 0.739484
Target:  5'- gGCGAAACUgg-UGCUggCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGAgguGCGG--GCCGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 165044 0.68 0.784272
Target:  5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3'
miRNA:   3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 172036 0.7 0.634958
Target:  5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5'
1718 5' -59.7 NC_001347.2 + 178720 0.72 0.511487
Target:  5'- cCGggGCUCagccuucuCACGcCCCGGCGCaaCGGGUg -3'
miRNA:   3'- cGCuuUGAG--------GUGC-GGGCCGUG--GCCCA- -5'
1718 5' -59.7 NC_001347.2 + 184402 0.71 0.57626
Target:  5'- uGCGggGCuUCUugGaCUcgugaagCGGCGCCGGGUc -3'
miRNA:   3'- -CGCuuUG-AGGugC-GG-------GCCGUGGCCCA- -5'
1718 5' -59.7 NC_001347.2 + 190998 0.66 0.856649
Target:  5'- cGCGA---UCCACGCuUCGuccuCGCCGGGUa -3'
miRNA:   3'- -CGCUuugAGGUGCG-GGCc---GUGGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.