Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1718 | 5' | -59.7 | NC_001347.2 | + | 191216 | 0.68 | 0.757703 |
Target: 5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3' miRNA: 3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 199665 | 0.67 | 0.817962 |
Target: 5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3' miRNA: 3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 207652 | 0.73 | 0.484253 |
Target: 5'- gGCGAcGCUCCAUG-CCGGCGCCuaacGGUc -3' miRNA: 3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 228735 | 0.66 | 0.84925 |
Target: 5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3' miRNA: 3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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