Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1718 | 5' | -59.7 | NC_001347.2 | + | 228735 | 0.66 | 0.84925 |
Target: 5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3' miRNA: 3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 207652 | 0.73 | 0.484253 |
Target: 5'- gGCGAcGCUCCAUG-CCGGCGCCuaacGGUc -3' miRNA: 3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 199665 | 0.67 | 0.817962 |
Target: 5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3' miRNA: 3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 191216 | 0.68 | 0.757703 |
Target: 5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3' miRNA: 3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 190998 | 0.66 | 0.856649 |
Target: 5'- cGCGA---UCCACGCuUCGuccuCGCCGGGUa -3' miRNA: 3'- -CGCUuugAGGUGCG-GGCc---GUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 184402 | 0.71 | 0.57626 |
Target: 5'- uGCGggGCuUCUugGaCUcgugaagCGGCGCCGGGUc -3' miRNA: 3'- -CGCuuUG-AGGugC-GG-------GCCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 178720 | 0.72 | 0.511487 |
Target: 5'- cCGggGCUCagccuucuCACGcCCCGGCGCaaCGGGUg -3' miRNA: 3'- cGCuuUGAG--------GUGC-GGGCCGUG--GCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 172036 | 0.7 | 0.634958 |
Target: 5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3' miRNA: 3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 165044 | 0.68 | 0.784272 |
Target: 5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3' miRNA: 3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 159276 | 0.68 | 0.739484 |
Target: 5'- gGCGAAACUgg-UGCUggCGGCGCCGGGc -3' miRNA: 3'- -CGCUUUGAgguGCGG--GCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 157930 | 0.68 | 0.756801 |
Target: 5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3' miRNA: 3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 157835 | 0.66 | 0.870899 |
Target: 5'- uGCGggGCcucaucgcagCCuuGCgCCGGUacGCCGGGa -3' miRNA: 3'- -CGCuuUGa---------GGugCG-GGCCG--UGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 155564 | 0.67 | 0.817962 |
Target: 5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3' miRNA: 3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 150767 | 0.67 | 0.80139 |
Target: 5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3' miRNA: 3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 144423 | 0.66 | 0.870899 |
Target: 5'- -gGAGAUUCgACGUCCgcugccagauGGCACgGGGg -3' miRNA: 3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 142488 | 0.74 | 0.432009 |
Target: 5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3' miRNA: 3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 142432 | 0.68 | 0.748639 |
Target: 5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3' miRNA: 3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136488 | 0.68 | 0.739484 |
Target: 5'- cGCG-GGC-CCugGCCCGcGCAugcgccCCGGGg -3' miRNA: 3'- -CGCuUUGaGGugCGGGC-CGU------GGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136289 | 0.77 | 0.303739 |
Target: 5'- cGCG--GC-CCAUGCCCGGCACgGGGc -3' miRNA: 3'- -CGCuuUGaGGUGCGGGCCGUGgCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 136079 | 0.74 | 0.440491 |
Target: 5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3' miRNA: 3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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