Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1718 | 5' | -59.7 | NC_001347.2 | + | 142432 | 0.68 | 0.748639 |
Target: 5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3' miRNA: 3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 38909 | 0.68 | 0.766669 |
Target: 5'- cGCGGAACcCgGCGCCa-GCGCCaGGUa -3' miRNA: 3'- -CGCUUUGaGgUGCGGgcCGUGGcCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 128850 | 0.67 | 0.826026 |
Target: 5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3' miRNA: 3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 76416 | 0.67 | 0.833933 |
Target: 5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3' miRNA: 3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 135782 | 0.67 | 0.829208 |
Target: 5'- cGCGGAccccgggucccguccAUUCCGCGgCgGGUggACCGGGa -3' miRNA: 3'- -CGCUU---------------UGAGGUGCgGgCCG--UGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 41639 | 0.66 | 0.844727 |
Target: 5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3' miRNA: 3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 228735 | 0.66 | 0.84925 |
Target: 5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3' miRNA: 3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 2384 | 0.66 | 0.84925 |
Target: 5'- cGCGAG--UCgGCGCCCGcCGCCGaGGc -3' miRNA: 3'- -CGCUUugAGgUGCGGGCcGUGGC-CCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 190998 | 0.66 | 0.856649 |
Target: 5'- cGCGA---UCCACGCuUCGuccuCGCCGGGUa -3' miRNA: 3'- -CGCUuugAGGUGCG-GGCc---GUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 144423 | 0.66 | 0.870899 |
Target: 5'- -gGAGAUUCgACGUCCgcugccagauGGCACgGGGg -3' miRNA: 3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 39624 | 0.67 | 0.817962 |
Target: 5'- cGCGGAcgcCUUCGuCGCCCGuGUGCCGcGGg -3' miRNA: 3'- -CGCUUu--GAGGU-GCGGGC-CGUGGC-CCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 199665 | 0.67 | 0.817962 |
Target: 5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3' miRNA: 3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 129579 | 0.68 | 0.766669 |
Target: 5'- cCGAGAgUCUACGUCUGGCACCc--- -3' miRNA: 3'- cGCUUUgAGGUGCGGGCCGUGGccca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 6210 | 0.68 | 0.784272 |
Target: 5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3' miRNA: 3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 112830 | 0.68 | 0.775528 |
Target: 5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3' miRNA: 3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 38696 | 0.68 | 0.784272 |
Target: 5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3' miRNA: 3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 150767 | 0.67 | 0.80139 |
Target: 5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3' miRNA: 3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 165044 | 0.68 | 0.784272 |
Target: 5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3' miRNA: 3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 63038 | 0.67 | 0.817962 |
Target: 5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3' miRNA: 3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5' |
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1718 | 5' | -59.7 | NC_001347.2 | + | 155564 | 0.67 | 0.817962 |
Target: 5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3' miRNA: 3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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