miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17181 3' -56.7 NC_004333.2 + 15468 0.66 0.579483
Target:  5'- --aUCGGCgCGCUUggcgUGCCGaGCGCa-- -3'
miRNA:   3'- aggAGCCG-GCGAA----ACGGUaCGCGaag -5'
17181 3' -56.7 NC_004333.2 + 2761 0.66 0.568455
Target:  5'- gCCugUCGGCCGCc--GCCG-GCGCg-- -3'
miRNA:   3'- aGG--AGCCGGCGaaaCGGUaCGCGaag -5'
17181 3' -56.7 NC_004333.2 + 33302 0.66 0.568455
Target:  5'- gCgUCGGCCGCaucgaGCCAaccgGCGCg-- -3'
miRNA:   3'- aGgAGCCGGCGaaa--CGGUa---CGCGaag -5'
17181 3' -56.7 NC_004333.2 + 27160 0.66 0.55748
Target:  5'- gUgUCGGCgCGCgaucaGCCAUGCGUg-- -3'
miRNA:   3'- aGgAGCCG-GCGaaa--CGGUACGCGaag -5'
17181 3' -56.7 NC_004333.2 + 9925 0.66 0.546566
Target:  5'- uUCCUgCGGuuaCCGCUacgUGCCcgucAUGCGCUc- -3'
miRNA:   3'- -AGGA-GCC---GGCGAa--ACGG----UACGCGAag -5'
17181 3' -56.7 NC_004333.2 + 1637 0.66 0.535722
Target:  5'- gUCgUCGGCgGCguaGCCcugaAUGCGCUg- -3'
miRNA:   3'- -AGgAGCCGgCGaaaCGG----UACGCGAag -5'
17181 3' -56.7 NC_004333.2 + 41224 0.67 0.524953
Target:  5'- aCCUgucgcCGGUCGUgucGCCGucgcUGCGCUUCc -3'
miRNA:   3'- aGGA-----GCCGGCGaaaCGGU----ACGCGAAG- -5'
17181 3' -56.7 NC_004333.2 + 43292 0.67 0.514268
Target:  5'- aUCC-CGGCCG----GCUAUGCGCUc- -3'
miRNA:   3'- -AGGaGCCGGCgaaaCGGUACGCGAag -5'
17181 3' -56.7 NC_004333.2 + 22496 0.67 0.493173
Target:  5'- uUCCUCGGCgGuCUgaucggUGCgcgCAUGCGCcgCg -3'
miRNA:   3'- -AGGAGCCGgC-GAa-----ACG---GUACGCGaaG- -5'
17181 3' -56.7 NC_004333.2 + 20165 0.67 0.482775
Target:  5'- -aCUCGGCCGCcg-GCuCggGCGCa-- -3'
miRNA:   3'- agGAGCCGGCGaaaCG-GuaCGCGaag -5'
17181 3' -56.7 NC_004333.2 + 2750 0.67 0.472483
Target:  5'- gCCgagaucgCGGCCGCcgUGCCGgucGCGUUcgUCa -3'
miRNA:   3'- aGGa------GCCGGCGaaACGGUa--CGCGA--AG- -5'
17181 3' -56.7 NC_004333.2 + 15279 0.67 0.472483
Target:  5'- gUCUgacCGGCCuGCUgccgGCCGUGCGgaUUg -3'
miRNA:   3'- -AGGa--GCCGG-CGAaa--CGGUACGCgaAG- -5'
17181 3' -56.7 NC_004333.2 + 40718 0.68 0.432481
Target:  5'- uUCgUCGGCCGCUUcgGCCugauaccaGCGUggCg -3'
miRNA:   3'- -AGgAGCCGGCGAAa-CGGua------CGCGaaG- -5'
17181 3' -56.7 NC_004333.2 + 10272 0.68 0.422793
Target:  5'- gCCgaCGGCCGCa-UGCgCGUGCGCg-- -3'
miRNA:   3'- aGGa-GCCGGCGaaACG-GUACGCGaag -5'
17181 3' -56.7 NC_004333.2 + 31172 0.68 0.413235
Target:  5'- -aCUCGcGCCGCUgacggGCCAgGCGCc-- -3'
miRNA:   3'- agGAGC-CGGCGAaa---CGGUaCGCGaag -5'
17181 3' -56.7 NC_004333.2 + 38134 0.69 0.394526
Target:  5'- aUCUCGGCC---UUGCCAaaGUGCUUCg -3'
miRNA:   3'- aGGAGCCGGcgaAACGGUa-CGCGAAG- -5'
17181 3' -56.7 NC_004333.2 + 46105 0.7 0.358793
Target:  5'- aCCUUGGCCGagc-GCgGUGCGCg-- -3'
miRNA:   3'- aGGAGCCGGCgaaaCGgUACGCGaag -5'
17181 3' -56.7 NC_004333.2 + 18839 0.7 0.35022
Target:  5'- cCCgcgCGGCaguaCGCagUUGCCGUGCGCa-- -3'
miRNA:   3'- aGGa--GCCG----GCGa-AACGGUACGCGaag -5'
17181 3' -56.7 NC_004333.2 + 29967 0.7 0.333517
Target:  5'- gCCgagcgCGGCCGCgcUGCCAccgGCGCc-- -3'
miRNA:   3'- aGGa----GCCGGCGaaACGGUa--CGCGaag -5'
17181 3' -56.7 NC_004333.2 + 37847 0.72 0.252192
Target:  5'- aUCCUUGGCCuGCUUgGCC-UGCGUg-- -3'
miRNA:   3'- -AGGAGCCGG-CGAAaCGGuACGCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.