miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17181 5' -58.9 NC_004333.2 + 9056 0.66 0.499103
Target:  5'- ----cGCGuCGgucGCCGccGCGCacGGCCGCa -3'
miRNA:   3'- cuuuuCGC-GCa--CGGCu-CGCG--CCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 20921 0.66 0.499103
Target:  5'- ---uGGCGUucgaGCagGAuGCGCGGCCGCc -3'
miRNA:   3'- cuuuUCGCGca--CGg-CU-CGCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 28524 0.66 0.499103
Target:  5'- cGGGAGUGCGcGCCGAcGCGUgcauucccGGCauCGCa -3'
miRNA:   3'- cUUUUCGCGCaCGGCU-CGCG--------CCG--GCG- -5'
17181 5' -58.9 NC_004333.2 + 32212 0.66 0.499103
Target:  5'- cGAuGAGCaCGUcGCCGAGCGUcuuGaGCuCGCg -3'
miRNA:   3'- -CUuUUCGcGCA-CGGCUCGCG---C-CG-GCG- -5'
17181 5' -58.9 NC_004333.2 + 40029 0.66 0.499103
Target:  5'- ----cGCGCGgcGCCacGGCGCGGaCGCc -3'
miRNA:   3'- cuuuuCGCGCa-CGGc-UCGCGCCgGCG- -5'
17181 5' -58.9 NC_004333.2 + 8521 0.66 0.488907
Target:  5'- aAGAAGuCGCccGUGCCGAacaGCGCGaCCGg -3'
miRNA:   3'- cUUUUC-GCG--CACGGCU---CGCGCcGGCg -5'
17181 5' -58.9 NC_004333.2 + 20237 0.66 0.488907
Target:  5'- ----uGUGCGc-CCGAGCcgGCGGCCGa -3'
miRNA:   3'- cuuuuCGCGCacGGCUCG--CGCCGGCg -5'
17181 5' -58.9 NC_004333.2 + 41682 0.66 0.488907
Target:  5'- -cAGAGCaCGaG-CGAGCGCgugGGCCGCa -3'
miRNA:   3'- cuUUUCGcGCaCgGCUCGCG---CCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 38561 0.66 0.478811
Target:  5'- cGAGgcGCuGCGUGCCGucccauUGCGGCagCGCa -3'
miRNA:   3'- -CUUuuCG-CGCACGGCuc----GCGCCG--GCG- -5'
17181 5' -58.9 NC_004333.2 + 44434 0.66 0.478811
Target:  5'- ---uGGUGCGUGCgaGGCGCucGGCCuGCc -3'
miRNA:   3'- cuuuUCGCGCACGgcUCGCG--CCGG-CG- -5'
17181 5' -58.9 NC_004333.2 + 45177 0.66 0.478811
Target:  5'- ----cGCGCuUGCUGAuGCGCaGCgGCa -3'
miRNA:   3'- cuuuuCGCGcACGGCU-CGCGcCGgCG- -5'
17181 5' -58.9 NC_004333.2 + 18601 0.66 0.478811
Target:  5'- cGAccGGCGCG-GCa-GGCGCgGGCgGCa -3'
miRNA:   3'- -CUuuUCGCGCaCGgcUCGCG-CCGgCG- -5'
17181 5' -58.9 NC_004333.2 + 28610 0.66 0.478811
Target:  5'- ----cGUGCGaUGCCGGgaaugcacGCGuCGGCgCGCa -3'
miRNA:   3'- cuuuuCGCGC-ACGGCU--------CGC-GCCG-GCG- -5'
17181 5' -58.9 NC_004333.2 + 29424 0.66 0.478811
Target:  5'- uGAAGuGCGCGUGCgacAGCGCaugGGCUGg -3'
miRNA:   3'- -CUUUuCGCGCACGgc-UCGCG---CCGGCg -5'
17181 5' -58.9 NC_004333.2 + 37965 0.66 0.476804
Target:  5'- cGAGAGCGCGaaucgcgagcagGCCGaAGCGCucaccGGCCu- -3'
miRNA:   3'- cUUUUCGCGCa-----------CGGC-UCGCG-----CCGGcg -5'
17181 5' -58.9 NC_004333.2 + 4809 0.66 0.468818
Target:  5'- uGAAAGCugGCGUGCU---CGCGGgCGCg -3'
miRNA:   3'- cUUUUCG--CGCACGGcucGCGCCgGCG- -5'
17181 5' -58.9 NC_004333.2 + 4692 0.66 0.468818
Target:  5'- ---uGGCGCucaauuacgGUaccucgaaacuGCCG-GCGCGGCCGUu -3'
miRNA:   3'- cuuuUCGCG---------CA-----------CGGCuCGCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 25230 0.66 0.468818
Target:  5'- --cAGGCgaGCGUGUCGAucggaggcaucGgGCaGGCCGCg -3'
miRNA:   3'- cuuUUCG--CGCACGGCU-----------CgCG-CCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 35106 0.66 0.468818
Target:  5'- aGGAcAGCGCGUcacGCCGAugguguucgGCGCGaCCGg -3'
miRNA:   3'- -CUUuUCGCGCA---CGGCU---------CGCGCcGGCg -5'
17181 5' -58.9 NC_004333.2 + 20391 0.66 0.468818
Target:  5'- -uAAGGC-CGUgGCCGca-GUGGCCGCg -3'
miRNA:   3'- cuUUUCGcGCA-CGGCucgCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.