miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17181 5' -58.9 NC_004333.2 + 4692 0.66 0.468818
Target:  5'- ---uGGCGCucaauuacgGUaccucgaaacuGCCG-GCGCGGCCGUu -3'
miRNA:   3'- cuuuUCGCG---------CA-----------CGGCuCGCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 20297 0.66 0.467824
Target:  5'- ---cAGuCGCGgucgaucGCCGccacgaaAGCGCGaGCCGCg -3'
miRNA:   3'- cuuuUC-GCGCa------CGGC-------UCGCGC-CGGCG- -5'
17181 5' -58.9 NC_004333.2 + 31463 0.66 0.462873
Target:  5'- ---cGGCGCGcaagaaggaguucgaUGagaCGAaacGCGCGGCUGCg -3'
miRNA:   3'- cuuuUCGCGC---------------ACg--GCU---CGCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 19502 0.66 0.458933
Target:  5'- ---uGGCGCGcUGgCG-GCGCucguGGCCGUa -3'
miRNA:   3'- cuuuUCGCGC-ACgGCuCGCG----CCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 43481 0.66 0.458933
Target:  5'- --cGAGCGUcUGCCugcgcGgGCGGCUGCg -3'
miRNA:   3'- cuuUUCGCGcACGGcu---CgCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 35440 0.66 0.458933
Target:  5'- ----uGCGCaGUGUUuAGUGCGGUCGUg -3'
miRNA:   3'- cuuuuCGCG-CACGGcUCGCGCCGGCG- -5'
17181 5' -58.9 NC_004333.2 + 46201 0.66 0.458933
Target:  5'- ---cGGCGUGauccucgaacuUGCCGuAGCGCGcaCCGCg -3'
miRNA:   3'- cuuuUCGCGC-----------ACGGC-UCGCGCc-GGCG- -5'
17181 5' -58.9 NC_004333.2 + 28189 0.66 0.44916
Target:  5'- cGGAAAcGCGCGcGuuGAGauuuucgGCGuGCCGCu -3'
miRNA:   3'- -CUUUU-CGCGCaCggCUCg------CGC-CGGCG- -5'
17181 5' -58.9 NC_004333.2 + 8297 0.66 0.44916
Target:  5'- ----cGCGCGgGCCG-GCGUcauccuGCCGCg -3'
miRNA:   3'- cuuuuCGCGCaCGGCuCGCGc-----CGGCG- -5'
17181 5' -58.9 NC_004333.2 + 2647 0.66 0.44916
Target:  5'- ----cGCGCuUGCCG-GCGUaucaGCCGCa -3'
miRNA:   3'- cuuuuCGCGcACGGCuCGCGc---CGGCG- -5'
17181 5' -58.9 NC_004333.2 + 20572 0.66 0.448189
Target:  5'- ---cGGCGCGUcgggucgcGCCGugguguuucugcaGGCGCGGCUcgGCc -3'
miRNA:   3'- cuuuUCGCGCA--------CGGC-------------UCGCGCCGG--CG- -5'
17181 5' -58.9 NC_004333.2 + 18165 0.66 0.44625
Target:  5'- aAGAAGCcgauugccgGCGUGCCGGGUgaugcgcucgucguGCGcGCgGCa -3'
miRNA:   3'- cUUUUCG---------CGCACGGCUCG--------------CGC-CGgCG- -5'
17181 5' -58.9 NC_004333.2 + 20638 0.67 0.439503
Target:  5'- ---cGGCGCGacccgacgcGCCGAcgaucagcgGCGCGGCCa- -3'
miRNA:   3'- cuuuUCGCGCa--------CGGCU---------CGCGCCGGcg -5'
17181 5' -58.9 NC_004333.2 + 18312 0.67 0.439503
Target:  5'- gGAuuAGCaGCGUGCCGucGGCGUcguagauuuccGGCgCGUa -3'
miRNA:   3'- -CUuuUCG-CGCACGGC--UCGCG-----------CCG-GCG- -5'
17181 5' -58.9 NC_004333.2 + 28966 0.67 0.439503
Target:  5'- ----uGCGcCGgccugcGCCGAGCGCGaUCGCg -3'
miRNA:   3'- cuuuuCGC-GCa-----CGGCUCGCGCcGGCG- -5'
17181 5' -58.9 NC_004333.2 + 11437 0.67 0.433766
Target:  5'- aGAAAAGCuc--GUCGAGCGCGGCaaggugacgacgaacCGCg -3'
miRNA:   3'- -CUUUUCGcgcaCGGCUCGCGCCG---------------GCG- -5'
17181 5' -58.9 NC_004333.2 + 41634 0.67 0.429965
Target:  5'- ---uGGCgGCagauUGUCGGGCGCGgGCUGCg -3'
miRNA:   3'- cuuuUCG-CGc---ACGGCUCGCGC-CGGCG- -5'
17181 5' -58.9 NC_004333.2 + 2428 0.67 0.429965
Target:  5'- ---cGGCaGCGUGCCuugguacGGCGCGGCgaacaccugCGCg -3'
miRNA:   3'- cuuuUCG-CGCACGGc------UCGCGCCG---------GCG- -5'
17181 5' -58.9 NC_004333.2 + 38320 0.67 0.429965
Target:  5'- ---cAGgGCGUGCaucacguugaCGAacgGCGCGGCgCGCu -3'
miRNA:   3'- cuuuUCgCGCACG----------GCU---CGCGCCG-GCG- -5'
17181 5' -58.9 NC_004333.2 + 36935 0.67 0.429965
Target:  5'- ---uGGCGCagucuaucaauGUGCUGGGUugauaGCGGCCGg -3'
miRNA:   3'- cuuuUCGCG-----------CACGGCUCG-----CGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.