miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 3' -62.4 NC_004333.2 + 33423 0.66 0.326568
Target:  5'- cUGCGCGCcgaaccguaGCCGCGaguCCGGCAGcauugGCAGc -3'
miRNA:   3'- -AUGCGCGc--------CGGCGU---GGCCGUC-----UGUCa -5'
17182 3' -62.4 NC_004333.2 + 21173 0.66 0.325793
Target:  5'- -uCGCGCuGCCGCagGCCGGCcugcucgGGGCAu- -3'
miRNA:   3'- auGCGCGcCGGCG--UGGCCG-------UCUGUca -5'
17182 3' -62.4 NC_004333.2 + 28775 0.66 0.318875
Target:  5'- cGCGCG-GGUCGCGgCGGCGcGACu-- -3'
miRNA:   3'- aUGCGCgCCGGCGUgGCCGU-CUGuca -5'
17182 3' -62.4 NC_004333.2 + 13872 0.66 0.311319
Target:  5'- aGCGCGcCGcGCCGCgcgaagucgGCCGGCAcgggcugcgcGGCGGc -3'
miRNA:   3'- aUGCGC-GC-CGGCG---------UGGCCGU----------CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 44532 0.66 0.310571
Target:  5'- cGCGCccuCGGUguccuuuUGCACCGGCAGGCcGa -3'
miRNA:   3'- aUGCGc--GCCG-------GCGUGGCCGUCUGuCa -5'
17182 3' -62.4 NC_004333.2 + 45129 0.66 0.303899
Target:  5'- cGgGCGCGGCCGCG-CGGUGuuCAGc -3'
miRNA:   3'- aUgCGCGCCGGCGUgGCCGUcuGUCa -5'
17182 3' -62.4 NC_004333.2 + 29971 0.66 0.303899
Target:  5'- --aGCGCGGCCGCGCUGcCAccGGCGc- -3'
miRNA:   3'- augCGCGCCGGCGUGGCcGU--CUGUca -5'
17182 3' -62.4 NC_004333.2 + 11986 0.66 0.303899
Target:  5'- gGCGCGCGcGCCGCugC-GCAuGcCGGg -3'
miRNA:   3'- aUGCGCGC-CGGCGugGcCGU-CuGUCa -5'
17182 3' -62.4 NC_004333.2 + 22175 0.66 0.296616
Target:  5'- -uCGC-CGGCgGCgGCCGGCGG-CGGUu -3'
miRNA:   3'- auGCGcGCCGgCG-UGGCCGUCuGUCA- -5'
17182 3' -62.4 NC_004333.2 + 28987 0.66 0.296616
Target:  5'- -uUGCGCGGCCGC-CgGGUcGGCGu- -3'
miRNA:   3'- auGCGCGCCGGCGuGgCCGuCUGUca -5'
17182 3' -62.4 NC_004333.2 + 26070 0.66 0.289469
Target:  5'- gGCGCcgcaGCGGCgGCGCUuccggauucgGGCAGGCGa- -3'
miRNA:   3'- aUGCG----CGCCGgCGUGG----------CCGUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 18805 0.66 0.287352
Target:  5'- -uCGCGCGGCCGCagggcgcgugcuGCuaucgaagcccgcgCGGCAGuacGCAGUu -3'
miRNA:   3'- auGCGCGCCGGCG------------UG--------------GCCGUC---UGUCA- -5'
17182 3' -62.4 NC_004333.2 + 8650 0.66 0.282459
Target:  5'- --gGCGCGG-CGC-CCGGCuugcucguGACGGUg -3'
miRNA:   3'- augCGCGCCgGCGuGGCCGu-------CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 35559 0.66 0.282459
Target:  5'- -uCGCagGCGGCaCGCucACCGGCccguuGACGGUg -3'
miRNA:   3'- auGCG--CGCCG-GCG--UGGCCGu----CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 15501 0.67 0.275583
Target:  5'- cUGCuCGCGGCgGuCACCGGCGGcGCGu- -3'
miRNA:   3'- -AUGcGCGCCGgC-GUGGCCGUC-UGUca -5'
17182 3' -62.4 NC_004333.2 + 39243 0.67 0.275583
Target:  5'- aGCGCGC-GCaGCACgGGCGG-CAGg -3'
miRNA:   3'- aUGCGCGcCGgCGUGgCCGUCuGUCa -5'
17182 3' -62.4 NC_004333.2 + 40436 0.67 0.275583
Target:  5'- -cCGCGCGGCgugUGCACCGuuaGCAGAUuccGGa -3'
miRNA:   3'- auGCGCGCCG---GCGUGGC---CGUCUG---UCa -5'
17182 3' -62.4 NC_004333.2 + 31234 0.67 0.268842
Target:  5'- -uCGCGaCGGCCGCGCgGcGCAGcgccgucuCGGUg -3'
miRNA:   3'- auGCGC-GCCGGCGUGgC-CGUCu-------GUCA- -5'
17182 3' -62.4 NC_004333.2 + 13424 0.67 0.268842
Target:  5'- gUGCGCGCGGCCGaaCGCCuGaucauggauGACGGUc -3'
miRNA:   3'- -AUGCGCGCCGGC--GUGGcCgu-------CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 12454 0.67 0.268842
Target:  5'- gGCGCGCcgGGCgggGCGCgGGCGGGCGc- -3'
miRNA:   3'- aUGCGCG--CCGg--CGUGgCCGUCUGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.