miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 3' -62.4 NC_004333.2 + 28942 0.67 0.268175
Target:  5'- -uCGCGCGGCacgagcgcuugagCGCGCCGGCuacgaacGCAGc -3'
miRNA:   3'- auGCGCGCCG-------------GCGUGGCCGuc-----UGUCa -5'
17182 3' -62.4 NC_004333.2 + 30502 0.67 0.262235
Target:  5'- aGCGUGCGGCCG-ACCaGGCuGcCGGc -3'
miRNA:   3'- aUGCGCGCCGGCgUGG-CCGuCuGUCa -5'
17182 3' -62.4 NC_004333.2 + 22018 0.67 0.260278
Target:  5'- aGCGCGCGGgcguuuucucgaCGCagaucacGCgGGCGGACAGa -3'
miRNA:   3'- aUGCGCGCCg-----------GCG-------UGgCCGUCUGUCa -5'
17182 3' -62.4 NC_004333.2 + 13533 0.67 0.25576
Target:  5'- gUGCuCGCGGCguUGcCGCCGGCGGcCAGg -3'
miRNA:   3'- -AUGcGCGCCG--GC-GUGGCCGUCuGUCa -5'
17182 3' -62.4 NC_004333.2 + 9667 0.67 0.25576
Target:  5'- gGC-CGauGCCGCGCCGGCuGGCGc- -3'
miRNA:   3'- aUGcGCgcCGGCGUGGCCGuCUGUca -5'
17182 3' -62.4 NC_004333.2 + 2671 0.67 0.25576
Target:  5'- aACGC-CGGCagcuugcagcguCGCGCCGGCGgcggccGACAGg -3'
miRNA:   3'- aUGCGcGCCG------------GCGUGGCCGU------CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 13947 0.67 0.25512
Target:  5'- --aGCGUGGCCGCcuuggcgacuucaGgCGGCGGcCGGUg -3'
miRNA:   3'- augCGCGCCGGCG-------------UgGCCGUCuGUCA- -5'
17182 3' -62.4 NC_004333.2 + 272 0.67 0.249417
Target:  5'- gGCGCaagccaagccgGCGGgCGCACgGGCAGugGa- -3'
miRNA:   3'- aUGCG-----------CGCCgGCGUGgCCGUCugUca -5'
17182 3' -62.4 NC_004333.2 + 43388 0.67 0.245674
Target:  5'- cGCGCaaucgcuauggucccGCaGCCGC-CCGcGCAGGCAGa -3'
miRNA:   3'- aUGCG---------------CGcCGGCGuGGC-CGUCUGUCa -5'
17182 3' -62.4 NC_004333.2 + 18204 0.67 0.24382
Target:  5'- gUGCGCGCGGCaucgcaauaCGCGCCGGaaaucuacgacgccGACGGc -3'
miRNA:   3'- -AUGCGCGCCG---------GCGUGGCCgu------------CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 29896 0.67 0.243204
Target:  5'- cUGCGCGaucgGGCCGCGCgCGGCAuccuCGGc -3'
miRNA:   3'- -AUGCGCg---CCGGCGUG-GCCGUcu--GUCa -5'
17182 3' -62.4 NC_004333.2 + 3914 0.67 0.243204
Target:  5'- aGCGCcagGCGGCaGCGgCGGCAGGCcGa -3'
miRNA:   3'- aUGCG---CGCCGgCGUgGCCGUCUGuCa -5'
17182 3' -62.4 NC_004333.2 + 14051 0.67 0.243204
Target:  5'- aGCGCGCGcagcucGCgCGCACCGGCcGcCGGc -3'
miRNA:   3'- aUGCGCGC------CG-GCGUGGCCGuCuGUCa -5'
17182 3' -62.4 NC_004333.2 + 7751 0.68 0.237121
Target:  5'- gACGcCGUGGUCGgguuCGCCGGCAGucgaaGCGGUc -3'
miRNA:   3'- aUGC-GCGCCGGC----GUGGCCGUC-----UGUCA- -5'
17182 3' -62.4 NC_004333.2 + 41834 0.68 0.231166
Target:  5'- gGCGCcCGGCCGCGagCGGuCGGGCAu- -3'
miRNA:   3'- aUGCGcGCCGGCGUg-GCC-GUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 10561 0.68 0.231166
Target:  5'- cGCGCGUuuaucGGgCGCAUC-GCAGGCGGUg -3'
miRNA:   3'- aUGCGCG-----CCgGCGUGGcCGUCUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 41650 0.68 0.225337
Target:  5'- gGCGCgggcuGCGGCCGUacGCCGGCAaGgAGa -3'
miRNA:   3'- aUGCG-----CGCCGGCG--UGGCCGUcUgUCa -5'
17182 3' -62.4 NC_004333.2 + 17621 0.68 0.225337
Target:  5'- gACGC-CGGCCGCGCCcggugccguGGCcGACAcGUu -3'
miRNA:   3'- aUGCGcGCCGGCGUGG---------CCGuCUGU-CA- -5'
17182 3' -62.4 NC_004333.2 + 45657 0.68 0.225337
Target:  5'- cGCGCGCGcGCUGCgcaugcaccuACCGaGCGGGCGc- -3'
miRNA:   3'- aUGCGCGC-CGGCG----------UGGC-CGUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 16738 0.68 0.219633
Target:  5'- -cCGCGCGGUgcaGCACCGgGCAGGucgaAGUg -3'
miRNA:   3'- auGCGCGCCGg--CGUGGC-CGUCUg---UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.