miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 3' -62.4 NC_004333.2 + 272 0.67 0.249417
Target:  5'- gGCGCaagccaagccgGCGGgCGCACgGGCAGugGa- -3'
miRNA:   3'- aUGCG-----------CGCCgGCGUGgCCGUCugUca -5'
17182 3' -62.4 NC_004333.2 + 1924 0.69 0.203258
Target:  5'- cACGCGUcugcaccagcuGGcCCGCACCGGCGacGCGGg -3'
miRNA:   3'- aUGCGCG-----------CC-GGCGUGGCCGUc-UGUCa -5'
17182 3' -62.4 NC_004333.2 + 2671 0.67 0.25576
Target:  5'- aACGC-CGGCagcuugcagcguCGCGCCGGCGgcggccGACAGg -3'
miRNA:   3'- aUGCGcGCCG------------GCGUGGCCGU------CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 2817 0.71 0.140222
Target:  5'- cACG-GCGGCCGCGaucUCGGCuguGACGGg -3'
miRNA:   3'- aUGCgCGCCGGCGU---GGCCGu--CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 3075 0.7 0.173671
Target:  5'- cUACGuCGCGGCggaCGCGCCGGCGaGCGu- -3'
miRNA:   3'- -AUGC-GCGCCG---GCGUGGCCGUcUGUca -5'
17182 3' -62.4 NC_004333.2 + 3306 0.69 0.187953
Target:  5'- gUGCGCGCGGCgGCGCgCGGUuGAa--- -3'
miRNA:   3'- -AUGCGCGCCGgCGUG-GCCGuCUguca -5'
17182 3' -62.4 NC_004333.2 + 3914 0.67 0.243204
Target:  5'- aGCGCcagGCGGCaGCGgCGGCAGGCcGa -3'
miRNA:   3'- aUGCG---CGCCGgCGUgGCCGUCUGuCa -5'
17182 3' -62.4 NC_004333.2 + 4599 0.71 0.144056
Target:  5'- cAUGaaCGGCCGCGCCGGCAGuuucgaGGUa -3'
miRNA:   3'- aUGCgcGCCGGCGUGGCCGUCug----UCA- -5'
17182 3' -62.4 NC_004333.2 + 7751 0.68 0.237121
Target:  5'- gACGcCGUGGUCGgguuCGCCGGCAGucgaaGCGGUc -3'
miRNA:   3'- aUGC-GCGCCGGC----GUGGCCGUC-----UGUCA- -5'
17182 3' -62.4 NC_004333.2 + 8650 0.66 0.282459
Target:  5'- --gGCGCGG-CGC-CCGGCuugcucguGACGGUg -3'
miRNA:   3'- augCGCGCCgGCGuGGCCGu-------CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 9606 0.7 0.16913
Target:  5'- --gGCGCGGCaucggccgguugCGCACCGGCugccGGCGGc -3'
miRNA:   3'- augCGCGCCG------------GCGUGGCCGu---CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 9667 0.67 0.25576
Target:  5'- gGC-CGauGCCGCGCCGGCuGGCGc- -3'
miRNA:   3'- aUGcGCgcCGGCGUGGCCGuCUGUca -5'
17182 3' -62.4 NC_004333.2 + 9704 0.71 0.125805
Target:  5'- cGgGCGCaGGCgCGcCGCCGGCAGcCGGUg -3'
miRNA:   3'- aUgCGCG-CCG-GC-GUGGCCGUCuGUCA- -5'
17182 3' -62.4 NC_004333.2 + 10561 0.68 0.231166
Target:  5'- cGCGCGUuuaucGGgCGCAUC-GCAGGCGGUg -3'
miRNA:   3'- aUGCGCG-----CCgGCGUGGcCGUCUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 10860 0.71 0.129275
Target:  5'- cACGCGCuugacGCCGCgcgggaagaacGCCGGCGcGACAGUc -3'
miRNA:   3'- aUGCGCGc----CGGCG-----------UGGCCGU-CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 11941 0.76 0.061064
Target:  5'- cGCGCccguuuCGGCCG-ACCGGCAGACGGa -3'
miRNA:   3'- aUGCGc-----GCCGGCgUGGCCGUCUGUCa -5'
17182 3' -62.4 NC_004333.2 + 11986 0.66 0.303899
Target:  5'- gGCGCGCGcGCCGCugC-GCAuGcCGGg -3'
miRNA:   3'- aUGCGCGC-CGGCGugGcCGU-CuGUCa -5'
17182 3' -62.4 NC_004333.2 + 12454 0.67 0.268842
Target:  5'- gGCGCGCcgGGCgggGCGCgGGCGGGCGc- -3'
miRNA:   3'- aUGCGCG--CCGg--CGUGgCCGUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 13424 0.67 0.268842
Target:  5'- gUGCGCGCGGCCGaaCGCCuGaucauggauGACGGUc -3'
miRNA:   3'- -AUGCGCGCCGGC--GUGGcCgu-------CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 13533 0.67 0.25576
Target:  5'- gUGCuCGCGGCguUGcCGCCGGCGGcCAGg -3'
miRNA:   3'- -AUGcGCGCCG--GC-GUGGCCGUCuGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.