miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 3' -62.4 NC_004333.2 + 30334 1.05 0.000322
Target:  5'- aUACGCGCGGCCGCACCGGCAGACAGUu -3'
miRNA:   3'- -AUGCGCGCCGGCGUGGCCGUCUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 41650 0.68 0.225337
Target:  5'- gGCGCgggcuGCGGCCGUacGCCGGCAaGgAGa -3'
miRNA:   3'- aUGCG-----CGCCGGCG--UGGCCGUcUgUCa -5'
17182 3' -62.4 NC_004333.2 + 41834 0.68 0.231166
Target:  5'- gGCGCcCGGCCGCGagCGGuCGGGCAu- -3'
miRNA:   3'- aUGCGcGCCGGCGUg-GCC-GUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 33423 0.66 0.326568
Target:  5'- cUGCGCGCcgaaccguaGCCGCGaguCCGGCAGcauugGCAGc -3'
miRNA:   3'- -AUGCGCGc--------CGGCGU---GGCCGUC-----UGUCa -5'
17182 3' -62.4 NC_004333.2 + 48112 0.73 0.101011
Target:  5'- gGCGCGCGcaCCGCGCCGGCAugguGACcGUc -3'
miRNA:   3'- aUGCGCGCc-GGCGUGGCCGU----CUGuCA- -5'
17182 3' -62.4 NC_004333.2 + 10860 0.71 0.129275
Target:  5'- cACGCGCuugacGCCGCgcgggaagaacGCCGGCGcGACAGUc -3'
miRNA:   3'- aUGCGCGc----CGGCG-----------UGGCCGU-CUGUCA- -5'
17182 3' -62.4 NC_004333.2 + 4599 0.71 0.144056
Target:  5'- cAUGaaCGGCCGCGCCGGCAGuuucgaGGUa -3'
miRNA:   3'- aUGCgcGCCGGCGUGGCCGUCug----UCA- -5'
17182 3' -62.4 NC_004333.2 + 9606 0.7 0.16913
Target:  5'- --gGCGCGGCaucggccgguugCGCACCGGCugccGGCGGc -3'
miRNA:   3'- augCGCGCCG------------GCGUGGCCGu---CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 19635 0.69 0.19804
Target:  5'- --aGCGCGGCCGaCGCUGGCcGucaACAGc -3'
miRNA:   3'- augCGCGCCGGC-GUGGCCGuC---UGUCa -5'
17182 3' -62.4 NC_004333.2 + 17621 0.68 0.225337
Target:  5'- gACGC-CGGCCGCGCCcggugccguGGCcGACAcGUu -3'
miRNA:   3'- aUGCGcGCCGGCGUGG---------CCGuCUGU-CA- -5'
17182 3' -62.4 NC_004333.2 + 20971 0.69 0.203258
Target:  5'- aACGCGC-GCgGCGCgGGCgAGugGGUg -3'
miRNA:   3'- aUGCGCGcCGgCGUGgCCG-UCugUCA- -5'
17182 3' -62.4 NC_004333.2 + 3306 0.69 0.187953
Target:  5'- gUGCGCGCGGCgGCGCgCGGUuGAa--- -3'
miRNA:   3'- -AUGCGCGCCGgCGUG-GCCGuCUguca -5'
17182 3' -62.4 NC_004333.2 + 39185 0.8 0.028272
Target:  5'- cUGCGCGC-GCUGCACCGGCAGcACGGc -3'
miRNA:   3'- -AUGCGCGcCGGCGUGGCCGUC-UGUCa -5'
17182 3' -62.4 NC_004333.2 + 47183 0.68 0.208595
Target:  5'- aACGCGCuGCCGCGCagcacgaGGCAcaagucgccgcGACGGg -3'
miRNA:   3'- aUGCGCGcCGGCGUGg------CCGU-----------CUGUCa -5'
17182 3' -62.4 NC_004333.2 + 25937 0.8 0.028272
Target:  5'- uUGCGCGCGGCgCGaUGCCGGCGGcCAGUa -3'
miRNA:   3'- -AUGCGCGCCG-GC-GUGGCCGUCuGUCA- -5'
17182 3' -62.4 NC_004333.2 + 38380 0.69 0.183081
Target:  5'- cGCGUGuCGGgUGCGCCGGCGuGACGc- -3'
miRNA:   3'- aUGCGC-GCCgGCGUGGCCGU-CUGUca -5'
17182 3' -62.4 NC_004333.2 + 20573 0.68 0.214053
Target:  5'- gGCGCGUcgGGUCGCGCCGugguguuucuGCAGGCGc- -3'
miRNA:   3'- aUGCGCG--CCGGCGUGGC----------CGUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 45657 0.68 0.225337
Target:  5'- cGCGCGCGcGCUGCgcaugcaccuACCGaGCGGGCGc- -3'
miRNA:   3'- aUGCGCGC-CGGCG----------UGGC-CGUCUGUca -5'
17182 3' -62.4 NC_004333.2 + 45065 0.78 0.043314
Target:  5'- -cCGCGCGGCCGCGCCcgggcaagaaaacGGCGGACu-- -3'
miRNA:   3'- auGCGCGCCGGCGUGG-------------CCGUCUGuca -5'
17182 3' -62.4 NC_004333.2 + 40382 0.71 0.144056
Target:  5'- -cCGCGCGGCCGacucgaacCCGGUugaAGACGGg -3'
miRNA:   3'- auGCGCGCCGGCgu------GGCCG---UCUGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.